Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1653 ATGGAAATGATGCCATACCAACTTTCAAGATTACCTTATCAGGATACCCTCAAACTTCTTGAAGCTGATATACAACATGCCAATGCTTTGGCTGCTGCAATTCCCAGAGGCAAGGGTGGGACTCTTCTTCAAATGAAATTGGTTTATAATCAACTAGCTCCTCTCTTTCTATTACTTCTGCAATGGATGGATTGTTCTTGTGCAGGCTTTCTTATACACAGATATCTCAACCTCTTCCACATAGTTATATACAAGGTACACAATGATGGTAGATCAATAATGAGTGCTCATGGAAGGAAGGCTACTGTTGGGGACTTTTACGCGGTTATATTGCCGTCCCTCCAACGCCTTCATGGTAGCTTGGAGAAGTTGGAGATTTCTGAAGAAGAGCACTATAGCATAGAAGAAGGTTCAAGTCAATGCAAGAAAATGATTGAAGGAGATGGGAAACTAAACAATGTTGATTTTCAAAGAGACGATGAGTGTGGTATTTGCCTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGATATGTGTATTAGATGCTACCGCAAGTGGAACACTAGGTCACAGTCGTGTCCATTTTGCCGCGGTAGCTTGAGGAGAGTTAATTCAGAGGATCTGTGGGTATTAACATGTGATGAAGATGTTGTTGATGCTGAAACAGTTTCTAAGGAGGACTTATGGCGTTTCTACCTCTATATCAACAAGCTACCTAAAGATCACCCAGATGCACGATTTCTAATGTATTATGAATACCTGATTTAA 777 0.4054 MEMMPYQLSRLPYQDTLKLLEADIQHANALAAAIPRGKGGTLLQMKLVYNQLAPLFLLLLQWMDCSCAGFLIHRYLNLFHIVIYKVHNDGRSIMSAHGRKATVGDFYAVILPSLQRLHGSLEKLEISEEEHYSIEEGSSQCKKMIEGDGKLNNVDFQRDDECGICLEPCTKMVLPNCCHDMCIRCYRKWNTRSQSCPFCRGSLRRVNSEDLWVLTCDEDVVDAETVSKEDLWRFYLYINKLPKDHPDARFLMYYEYLI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1653 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 211 IPR013083 -
Lal17g1653 258 ProSitePatterns Zinc finger RING-type signature. 177 186 IPR017907 -
Lal17g1653 258 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 258 - -
Lal17g1653 258 Pfam Ring finger domain 160 200 IPR001841 -
Lal17g1653 258 SMART ring_2 162 199 IPR001841 -
Lal17g1653 258 PANTHER RING FINGER PROTEIN 41, 151 6 258 - -
Lal17g1653 258 SUPERFAMILY RING/U-box 153 204 - -
Lal17g1653 258 ProSiteProfiles Zinc finger RING-type profile. 162 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1653 Lal-Chr17 17797392 17800265 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1653 - - gmx:100790422 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1329 21 16644245 16658938 Lal17g1653 17 17797392 17800265 LSH