Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1599 ATGATCAACTTCTCCACCACCACTTCACGTCTTCTCCCGCCGTTACATGACGCCGTTAACCACCACTATTTACCCCGCAACGTATGCACCACAAAACGCTGCCGTTTCAACTTGCCACCCACTCGCATAATAACGCTATGTTCCCACCACCCTCACCGTACCGATGGCATAACGGTAAATTCCGAAGCTCCTCGAACCACCCGAAGAACCGTTTTGGTGGCACCGTTTCTAGCCGCCGGCGCGTCGTTTCTACTGTCAGCAAGAGCCGAAGAGAAAACTTCGCCACCGCCATCGCCGCCGTCGACGGCGTCGGAGGAGGAGTTGACGGTTTCGATACCCGAGGAGGTGATAACGTCGAGAATTTACGACGCGACGGTTATAGGAGAACCGTTGGCGATAGGGAAGGAGAGAGGGAAAGTGTGGGAGAAGTTGATGAATGCGAGAGTGGTGTATTTGGGTGAAGCGGAGCAGGTTCCGATTCCGGATGATAAGGAATTGGAGCTTGAGATTTTGAAGAATTTGCATAGGAGATGTTTGGAGAATCAGAAGCTTTTGTCTTTGGCTCTTGAAGCTTTTCCTTCTGATCTTCAACAACAACTCAATCGATTTTTGGATAACAAGATAGATGGAGAAACCTTGAAGTCATATACGTTGCATTGGCCGCCTCAACAGTGGCAGGAGTACGAACCTATTCTTAGTTACTGTCGTGAAAATGGAATTCGCCTCGTGGCTCTTGGTACTCCATTAGTGATCTTAAGGACTGTCCAAGCAGAAGGTATTAGTGGGCTTTCAAAGGCTGAACGTAAAGTATATGCACCTCCAGCTGGTTCAGGCTTCATATCAGGCTTTACTTCTATTTCACGTAGATCATCAGTTGATGGCACTCTAAATCCTTCTGTTCCTTTTGGTCCAAGGTCATACCTATCTGCCCAGGCTAGGGTAGTCGAGGAGTATACTATGTCCCAGATCATCTTACAAAACGTGCTTGAAGGAGGAGCCACTGGTATGTTAATAGTTGTGACTGGTGCAAATCATGTTACATATGGATCTAGAGGAACTGGTGTGCCAGCAAGAATTTCAAGAAAAATTCAAAAGAAAAACCAAGTGGTTATATTACTTGACCCTGAAAGGCAATTCATTCGTAGAGAGGGAGAAGTTCCTCTTGCCGACTTTTTATGGTATTCTGCTGCTAGACCCTGTATTAGAAATTGCTTTGACCGTGCAGAGATTGCTCGGGTTATGAATGCTGCTGGGCGGAGTAGAGATGCCCTTCCACAGGATCTTCAAAAGGGAATTGATCTTGGTTTAGTATCACCGGAGGTATTACAGAACTTCTTTGATCTAGAGCAGTATCCTCTGATTGCTGAACTCACTCACCGGTTCCAGGGTTTCAGGGAAAGATTGTTGGCAGATCCCAAATTCTTGAACAGATTAGCCATAGAAGAAGCTATATCGATAACAACTACACTATTAGCACAATATGAAAAGCGGAGAGAAAACTTTTTCCAAGAGCTTGACTATGTTATTACGGACACTGTCAGAGGATCAGTTGTTGATTTCTTTACAGTGTGGCTTCCAGCACCAACCTTGTCATTCCTTTCGTATGCTGATGAGACGAATGCACCTTCTTTAATAGACTTTCTTGGCTCCATCCCAGACAATGCATTTCAAAAGAATCCAGTAGGGACAAACTGGAATCTCAATCATAGAGTTGCATCAGTTGTATTTGGTGGTTTAAAACTAGCTGGTGTTGGATTTATTTCTAGCATAGGAGCTGTTGCTTCATCAAATTCTCTTTATACAATTCGTAAATTCTTTAATCCAGCCGTGATCACTAACCAACGAGTTCTAAGGTCACCAGTACTCAAAACAGCAATTGTTTATGCATTCTTTCTTGGAGTGTCTGCCAATCTACGCTATCAGATAATTGCCGGGTTAGTGGAGCAACGGATTTCAGATCAGTTTGCATCCGAAACATTTCTCGTAAATATGCTGTCATTTGTAACGCGGACAATCAATTCCTACTGGGGAACCCAGCAATGGATTGACCTTGCCCGTTCTACTGGACTTCAAGTTAGAAAGATAGAGTCACATAATACATCAGAAGAGTCTCCTATTGATGGTGCAGTTCTATGCAACAAAACAGAAGAGGCCACCATTGATGACATAAAAAATCATTGA 2181 0.4425 MINFSTTTSRLLPPLHDAVNHHYLPRNVCTTKRCRFNLPPTRIITLCSHHPHRTDGITVNSEAPRTTRRTVLVAPFLAAGASFLLSARAEEKTSPPPSPPSTASEEELTVSIPEEVITSRIYDATVIGEPLAIGKERGKVWEKLMNARVVYLGEAEQVPIPDDKELELEILKNLHRRCLENQKLLSLALEAFPSDLQQQLNRFLDNKIDGETLKSYTLHWPPQQWQEYEPILSYCRENGIRLVALGTPLVILRTVQAEGISGLSKAERKVYAPPAGSGFISGFTSISRRSSVDGTLNPSVPFGPRSYLSAQARVVEEYTMSQIILQNVLEGGATGMLIVVTGANHVTYGSRGTGVPARISRKIQKKNQVVILLDPERQFIRREGEVPLADFLWYSAARPCIRNCFDRAEIARVMNAAGRSRDALPQDLQKGIDLGLVSPEVLQNFFDLEQYPLIAELTHRFQGFRERLLADPKFLNRLAIEEAISITTTLLAQYEKRRENFFQELDYVITDTVRGSVVDFFTVWLPAPTLSFLSYADETNAPSLIDFLGSIPDNAFQKNPVGTNWNLNHRVASVVFGGLKLAGVGFISSIGAVASSNSLYTIRKFFNPAVITNQRVLRSPVLKTAIVYAFFLGVSANLRYQIIAGLVEQRISDQFASETFLVNMLSFVTRTINSYWGTQQWIDLARSTGLQVRKIESHNTSEESPIDGAVLCNKTEEATIDDIKNH 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1599 726 CDD ChanN-like 148 372 IPR007314 -
Lal17g1599 726 MobiDBLite consensus disorder prediction 88 109 - -
Lal17g1599 726 Pfam Protein RETICULATA-related 466 646 IPR021825 -
Lal17g1599 726 PANTHER PROTEIN RETICULATA-RELATED 5, CHLOROPLASTIC 56 725 - -
Lal17g1599 726 PANTHER PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATED 56 725 - -
Lal17g1599 726 Pfam Haem-binding uptake, Tiki superfamily, ChaN 140 359 IPR007314 -
Lal17g1599 726 Gene3D - 135 398 - -
Lal17g1599 726 SUPERFAMILY EreA/ChaN-like 139 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1599 Lal-Chr17 17371274 17377058 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1599 - - gmx:100810366 1059.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1599 17 17371274 17377058 Lal17g1599 17 17371274 17377058 ECH
Lal4g1592 4 20109738 20116617 Lal17g1599 17 17371274 17377058 LSH