Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1459 ATGTTTTCTTCTTCACTTTCATTCCTTCATTCTTCATTGTTATTCCCACCTTCAAATTCAACCCCAAATCCAAAGTTTACCTCATGTTTTGTGGTTGAAGCCAAAGCTAGTACCCGAAGAGAAGATAGAACTGCACGCCATATCCGTATCAGGAAGAAGGTTGAAGGAACACCAGAAAGACCGAGATTGTCTGTTTTCCGATCCAACAAGCATCTCTCTGTCCAGGTGATTGATGACACCAACATGCACACTCTTGCTTCAGCTTCAACACTACAGAAGACAATTTTTGAAGAGTTCAACTACACCTCTGGCCCTACTATTGAAGTAGCAAAGAGGGTGGGTGAAATCATTGCAAAGTCATGTATCGAGAAAGGGATTAAAAAGGTGGCCTTTGACCGTGGTGGGTACCCGTACCATGGCCGTGTTCAAGCACTTGCTGATGCAGCTCGTGAACATGGCCTGGAGTTCTAA 471 0.4416 MFSSSLSFLHSSLLFPPSNSTPNPKFTSCFVVEAKASTRREDRTARHIRIRKKVEGTPERPRLSVFRSNKHLSVQVIDDTNMHTLASASTLQKTIFEEFNYTSGPTIEVAKRVGEIIAKSCIEKGIKKVAFDRGGYPYHGRVQALADAAREHGLEF 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1459 156 CDD Ribosomal_L18_L5e 50 154 - -
Lal17g1459 156 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 21 156 IPR005484 GO:0003735|GO:0005840|GO:0006412
Lal17g1459 156 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 38 156 IPR005484 GO:0003735|GO:0005840|GO:0006412
Lal17g1459 156 Gene3D - 38 156 - -
Lal17g1459 156 TIGRFAM L18_bact: ribosomal protein uL18 40 156 IPR004389 GO:0003735|GO:0005840|GO:0006412
Lal17g1459 156 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 21 156 - -
Lal17g1459 156 Hamap 50S ribosomal protein L18 [rplR]. 38 156 IPR004389 GO:0003735|GO:0005840|GO:0006412
Lal17g1459 156 SUPERFAMILY Translational machinery components 39 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1459 Lal-Chr17 15976971 15979769 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1459 K02881 - gmx:100306308 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1459 17 15976971 15979769 Lal4g1481 4 18941929 18945158 LSH