Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1373 ATGGCAGGTGGTGCTTTTGTTGATTCTAATGGAGGACGTGATTTTGAGGGCAAAGTTACAACATTTGTGTTGATTACATGTTTTGTAGCTGCCATGGGAGGACTTCTATTTGGATATGATCTTGGAATTACGGGCGGAGTGACATCGATGGAAATATTCCTAGTAAAGTTTTTCCCGAGTGTATACAAACAAATGAAAGATGATACAGGAAATACGAGCCAGTATTGTAAATTCGATAGTCAACTTCTTACGTTGTTCACATCTTCTCTATACGTTGCAGCATTGCTAGCTTCTTTTGTTGCTGCCAACATCACAAGAAAATATGGACGGAAGCCATCAATGTTTATTGGTGGCTTGTTTTTCCTTGTTGGTGCCCTATTAAATGGTTTTGCTGTTAATGTTGAAATGCTTATAATTGGTCGTATATTACTAGGTTTTGGTGTTGGATTTTGTAATCAGTCTGTACCAGTATATTTATCTGAAATGGCTCCATCAAAAATCAGAGGTGCATTGAATATGGGTTTTCAAATGATGATTACAATTGGTATTCTCATTGCAAATCTTATCAACTATGGAACTTCTAAGCATAAAAATGGATGGAGAATATCTTTAGGCATTGGAGCTGTGCCAGCAATTTTGTTATGTGTTGGAACTCTTTGCTTAGATGAAACACCAAACTCTATGATTGAAAGAGGCCAACATGAAAAAGCTAAGGCAATGTTGCAGAAGATTCGTGGGACTAGTAATATTGATGAGGAATATCATGATCTTGTTGATGCTAGTGAAGAAGCTAAAAAAATTGAACACCCATGGAAGAATATTTTGCAACCTAAATATAGACCTCATGTCACATTTTGCTTTTTCATTCCAACTTTTCAACAACTCACTGGAATCAATGCCATCATGTTCTATGCTCCTGTTCTTTTCAAAATTTTAGGGTTTGGTGATGATGCTTCTCTCATGTCTGCAGTTATCACTGGCGGTGTTAATGTTGTTGCCACATTAGTTTCTATTTTTACAGTAGACAAGTTTGGGAGAAGAATATTGTTTCTTGAAGGTGGTGTCCAAATGCTTATTTGTCAGATTATAATTGGAGTCATGATTGCAATGAAATTTGGATTGAATGGTCAAGGATCATTTAGCAAAGTTGAAGCAGATCTGCTATTGTTGTTCATATGTTTATATGTTGCAGCATTTGCATGGTCATGGGGTCCATTAGGTTGGTTGGTTCCAACAGAAATATGCTCTCTTGAGATAAGACCTGCAGGTCAAGCTATCAATGTTGCAGTCAACATGCTCTTCACTTTTGCTATTGCTCAAGCTTTCCTTACAATGCTTTGCCACTTGAAGTTTGGTCTTTTCTTCTTCTTTGCTGCATTTGTCATCATCATGACCATTTTCATTGCTTTTTTGTTACCAGAGACCAAAAATATTCCACTTGAAGAAATGAGCTCAGTGTGGAGATCACACTGGTTTTGGAATAAGATTGTTCCTAATGATAATGATCTAGGTGGTTATAATCACAAGTCCAATCACAAGTCTATTCCTTGA 1551 0.3681 MAGGAFVDSNGGRDFEGKVTTFVLITCFVAAMGGLLFGYDLGITGGVTSMEIFLVKFFPSVYKQMKDDTGNTSQYCKFDSQLLTLFTSSLYVAALLASFVAANITRKYGRKPSMFIGGLFFLVGALLNGFAVNVEMLIIGRILLGFGVGFCNQSVPVYLSEMAPSKIRGALNMGFQMMITIGILIANLINYGTSKHKNGWRISLGIGAVPAILLCVGTLCLDETPNSMIERGQHEKAKAMLQKIRGTSNIDEEYHDLVDASEEAKKIEHPWKNILQPKYRPHVTFCFFIPTFQQLTGINAIMFYAPVLFKILGFGDDASLMSAVITGGVNVVATLVSIFTVDKFGRRILFLEGGVQMLICQIIIGVMIAMKFGLNGQGSFSKVEADLLLLFICLYVAAFAWSWGPLGWLVPTEICSLEIRPAGQAINVAVNMLFTFAIAQAFLTMLCHLKFGLFFFFAAFVIIMTIFIAFLLPETKNIPLEEMSSVWRSHWFWNKIVPNDNDLGGYNHKSNHKSIP 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1373 516 PANTHER MAJOR FACILITATOR, SUGAR TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY-RELATED 1 503 - -
Lal17g1373 516 SUPERFAMILY MFS general substrate transporter 27 483 IPR036259 -
Lal17g1373 516 ProSitePatterns Sugar transport proteins signature 2. 143 168 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lal17g1373 516 ProSitePatterns Sugar transport proteins signature 1. 337 354 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lal17g1373 516 PRINTS Sugar transporter signature 34 44 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal17g1373 516 PRINTS Sugar transporter signature 138 157 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal17g1373 516 PRINTS Sugar transporter signature 293 303 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal17g1373 516 PRINTS Sugar transporter signature 389 410 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal17g1373 516 PRINTS Sugar transporter signature 412 424 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal17g1373 516 ProSiteProfiles Major facilitator superfamily (MFS) profile. 26 476 IPR020846 GO:0022857
Lal17g1373 516 CDD MFS_STP 29 474 IPR044778 GO:0015145|GO:0015749
Lal17g1373 516 Pfam Sugar (and other) transporter 27 487 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lal17g1373 516 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 1 503 IPR045262 GO:0015144
Lal17g1373 516 TIGRFAM SP: MFS transporter, sugar porter (SP) family 19 483 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lal17g1373 516 Gene3D MFS general substrate transporter like domains 16 490 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1373 Lal-Chr17 15075351 15078144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1373 1 512 Organic Solute Cotransporters AT3G19940 67.573 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1373 K24193 - gmx:100794726 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1373 17 15075351 15078144 Lal21g1124 21 13806082 13810550 LSH