Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0910 ATGCAACCGTTAAGAATGAAGACTTGTTTGGATATGAAGTTACCGGTTTTCACGTGTTTGGATGAAGGGATTAGAACGCAATGGGTGAATTGCAGGAGAAGGAACTGTAGAGGGATTGTAGCTTGTAATGAGAACCGTAGAGGAGAGAGTTCAAGTTCGAGGTCGTTTTTCTCTCGGAACCATAACTATGCTCTATTGAAGCATCAAATGGAGGTTGCTGCAAAATCTGAGGATTATGAACAGGCTGCGAGGATTCGTGACTCGCTGAAATGTTTTGAAGAGGACGTGCCGGTTTTGCGTTTGCGGAAATTGTTGAAGGAAGCAATTGAGGATGAGAGATTTCAGGATGCAGCTAGATATCGTGATGAGCTAAAAGAAGTTGCTCCATATTCTCACTTAAAATGTTCCAGTGATGCTACAACAATGGGAATCAGAGTTCAAGTTAGGAGTGCATATATAGAGGGCAGAAGTCAGCCTTCAGAGGATATATACTTCTTTTCTTATAGAATCAGAATTACCAATAACTCAAACCGCCCTGTTCAACTTCTTCGAAGACATTGGATTTTAACCGATGCTAATGGGAAAACTGAAAATGTCTGGGGGCTTGGGGTTATTGGTGAACAGCCAGCTATACTTCCCAGGACTAGTTTTGAATACTCTTCTGCATGCCCATTAAGCACACAAAATGGTAGAATGGAAGGTGACTTTGAAATGATACATATTGACAAAGTAGGCTCAAGATCTTTTAATGTGGCCATTGCTCCCTTTTCCCTCTTCCTTCTTGGAGATGGTGATGGTGATACCATTTGA 810 0.416 MQPLRMKTCLDMKLPVFTCLDEGIRTQWVNCRRRNCRGIVACNENRRGESSSSRSFFSRNHNYALLKHQMEVAAKSEDYEQAARIRDSLKCFEEDVPVLRLRKLLKEAIEDERFQDAARYRDELKEVAPYSHLKCSSDATTMGIRVQVRSAYIEGRSQPSEDIYFFSYRIRITNNSNRPVQLLRRHWILTDANGKTENVWGLGVIGEQPAILPRTSFEYSSACPLSTQNGRMEGDFEMIHIDKVGSRSFNVAIAPFSLFLLGDGDGDTI 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0910 269 ProSiteProfiles ApaG domain profile. 138 265 IPR007474 -
Lal17g0910 269 ProSiteProfiles UVR domain profile. 60 95 IPR001943 GO:0005515
Lal17g0910 269 PANTHER OS05G0170800 PROTEIN 43 264 - -
Lal17g0910 269 ProSiteProfiles UVR domain profile. 95 130 IPR001943 GO:0005515
Lal17g0910 269 SUPERFAMILY ApaG-like 140 259 IPR036767 -
Lal17g0910 269 Gene3D UVR domain 61 96 - -
Lal17g0910 269 Gene3D ApaG domain 134 262 IPR036767 -
Lal17g0910 269 Pfam UvrB/uvrC motif 100 126 IPR001943 GO:0005515
Lal17g0910 269 Pfam UvrB/uvrC motif 68 90 IPR001943 GO:0005515
Lal17g0910 269 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 63 93 IPR036876 -
Lal17g0910 269 Pfam ApaG domain 156 239 IPR007474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0910 Lal-Chr17 7046055 7051593 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0910 - K06195 gmx:100799029 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0910 17 7046055 7051593 Lal17g0910 17 7046055 7051593 ECH
Lal7g0915 7 15621441 15625565 Lal17g0910 17 7046055 7051593 PCT
Lal17g0910 17 7046055 7051593 Lal7g0915 7 15621441 15625565 PCT