Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0847 ATGAAAAGGCCATTTAAACACCTTCACAAACGAAACACCGACAAACATGATTTCTTCGATGCTTTATTTGATGATCTTGTTGTCTTTATTCTCTCAAAACTCAGTTCCACTGCTTCTTCTCCTTCTCAATTCATTAACATTCTCTCCACATGCAAGAGGCTGAACCGTTTGGGTCTTCATCGTATGGTACTTTCAAAAGCTGGTCCAAAAGTGTTTTCCGTTAAGGCTAAAAATTGGTCTGAACATGTTCATCGTTTCTTTAAACTCTGTGTTAACGCTGGAAACCTTGACGCTTGTTACACTCTTGGAATGATCCGATTTTATTGTCTTAAAAACAGAGCGAGTGGTCTTTCTCTAATGGCGAAGGCGGCGATGAAATCTCACGCGCAGGCGTTGTACTCTTTGGCGGTAATACAGTTCAACGGAAGCGGAGGAACGAAGCAGGAGAAGGATTTAAGAGCCGGCGTGGCACTCTGTGCACGCGCTTCGCTTCTCGGCCACATCGACGCGCTTCGCGAGTTAGGTCACTGTTTACAAGACGGTTACGGCGTGAAGCAGAACGTCTCAGAGGGTCGTCGTTTACTAGTCAAGGCCAACGCGCTTGAGCTCGCGTTCGTCATACGCGCAGTCACCAGCGCGTCTCCATCACGTTCCCTCTCAACTTCCTCGGTGCTGACGTGGCGCGCTGTTGATTACACGGTGTGTCCGTTGCTGAGTGATTACGGGTACAACGTGGCGGTGCCAGTGGTGCAACCCGTGAACTGGCTCATGAGGGAGTGGTTTGAAACGGGTCCGGGTCGGGTCGAAATGGTTGAGGGTTTGAGGCTTTGTGCTCACATTGGGTGTGGTCGACCCGAGACCCGGGCCCACGAGTTTCGGAGGTGTTCGGTTTGTGGGAAAGTCAATTATTGCTCGCGTGGGTGTCAAGCTCTGGATTGGAAGTTGCGTCATAAAATGGAGTGCTCGCCGGAGGAACTGGTGGTTCCGGACAATGACGGTGGTGCTGGCGGTGGTGATGTGTTAGGTAATGACGACGTCGTTTGA 1044 0.5038 MKRPFKHLHKRNTDKHDFFDALFDDLVVFILSKLSSTASSPSQFINILSTCKRLNRLGLHRMVLSKAGPKVFSVKAKNWSEHVHRFFKLCVNAGNLDACYTLGMIRFYCLKNRASGLSLMAKAAMKSHAQALYSLAVIQFNGSGGTKQEKDLRAGVALCARASLLGHIDALRELGHCLQDGYGVKQNVSEGRRLLVKANALELAFVIRAVTSASPSRSLSTSSVLTWRAVDYTVCPLLSDYGYNVAVPVVQPVNWLMREWFETGPGRVEMVEGLRLCAHIGCGRPETRAHEFRRCSVCGKVNYCSRGCQALDWKLRHKMECSPEELVVPDNDGGAGGGDVLGNDDVV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0847 347 SUPERFAMILY HCP-like 84 201 - -
Lal17g0847 347 Gene3D Tetratricopeptide repeat domain 58 211 IPR011990 GO:0005515
Lal17g0847 347 SUPERFAMILY HIT/MYND zinc finger-like 274 323 - -
Lal17g0847 347 Pfam MYND finger 282 321 IPR002893 -
Lal17g0847 347 Gene3D - 270 323 - -
Lal17g0847 347 ProSiteProfiles Zinc finger MYND-type profile. 279 321 IPR002893 -
Lal17g0847 347 PANTHER MYND DOMAIN-CONTAINING 7 333 IPR044508 -
Lal17g0847 347 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 7 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0847 Lal-Chr17 6385866 6387854 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0847 - - adu:107463542 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0847 17 6385866 6387854 Lal4g0722 4 5957009 5964286 LSH