Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0837 ATGACACCAATGGCAGCATCCAGAAACTTGGGTTTTCAATTTCCATGGAATTTGAGCAATGCAAAGAAGGAAAATATGGAGGTTTTGAGGCTGAGACTTCATTCTTCATGCAATACTAACATGTTGAACAATAAAAGAAGATTTTCATTGGTGACTGCAAATTCTCATAGTAGTCATCAAAAAGTGGACACAGTTAATGGAACAAGGGTGAATGGAATACATGTAGTAGAGGCTCCTGTCTCAGGAAGCAAATCGGCTAACGAAAGCGCAGCGGATGCAGCTCTTATTACCAGCTTGCGCGGACGGTTTGTTGAGGGCAGGTTTGTGTATAGACAGATTTTTGCTATCAGGTCTTATGAAATTGGACCAGATAAAACTGCCACAATGGAAACACTCATGAATTTTCTTCAGGAAACTGCTCTTAATCATGTTACAAGCTCTGGTATAGGTGGGGACGGTTTTGGAGCTACTCGCGAGATGAGCCTTCGAAAACTCATATGGGTCGTTACTCGGATTCAAGTTCAAGTACAAAGATATAGCAAATGGGGAGATGAAATCGAAATTGATACTTGGGTTGATGCTGCTGGAAAGAATGGAATGCGAAGAGATTGGATTATTCGGGATCATTACACCAAAGAGATTATAACAAGAGCAACAAGCACATGGGTGATCATGAATAGAGAAACAAGAAGGCTAAGCAAGATACCTTGTGAAGTTAAACAAGAGCTTGTTCCTTTCTACCTTAATAGGATTGCTATTTCTAGTGAAGAAAAAGATTGTGAAAAGATAGACAAACTCACCGATGAAACCGCCGAGAGAATCCGTTCTGGATTGGCTATATTTGAATTGACTGGTTTTTTTTTACTTAATGCAATAAAGCCAAGGTGGAATGACATGGATGCTAATCAGCATGTGAACAATGTGAAATACATAGGATGGATTTTAGAGAGTGTGCCAATAGAAGTGCTAGAAGATTTTAATATGACAAGCATGACTTTGGAATTTCGGCGCGAATGTCGACAAACAAATTTGCTGGAATCCTTAACTAGTCCAACAGCAAGGGTAATAGGAGAGTCCAATAACTCCATTAACAGAAAGCCTGACCTACAATACACTCACATGCTTAGTCTTCAAGACAATAAATCAGATGTAGTTCGAGCCAGAACTGAATGGCATTTTAAGCAAAACTAA 1191 0.3946 MTPMAASRNLGFQFPWNLSNAKKENMEVLRLRLHSSCNTNMLNNKRRFSLVTANSHSSHQKVDTVNGTRVNGIHVVEAPVSGSKSANESAADAALITSLRGRFVEGRFVYRQIFAIRSYEIGPDKTATMETLMNFLQETALNHVTSSGIGGDGFGATREMSLRKLIWVVTRIQVQVQRYSKWGDEIEIDTWVDAAGKNGMRRDWIIRDHYTKEIITRATSTWVIMNRETRRLSKIPCEVKQELVPFYLNRIAISSEEKDCEKIDKLTDETAERIRSGLAIFELTGFFLLNAIKPRWNDMDANQHVNNVKYIGWILESVPIEVLEDFNMTSMTLEFRRECRQTNLLESLTSPTARVIGESNNSINRKPDLQYTHMLSLQDNKSDVVRARTEWHFKQN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0837 396 Pfam Acyl-ACP thioesterase 109 392 IPR002864 GO:0006633|GO:0016790
Lal17g0837 396 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 19 395 - -
Lal17g0837 396 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 292 391 IPR029069 -
Lal17g0837 396 Gene3D Hotdog Thioesterase 101 395 - -
Lal17g0837 396 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 108 252 IPR029069 -
Lal17g0837 396 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 19 395 IPR045023 GO:0006633|GO:0016297
Lal17g0837 396 CDD 4HBT 108 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0837 Lal-Chr17 6268478 6271125 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0837 101 394 Acyl Lipid Metabolism Gene Families AT1G08510 52.721 2.81e-105 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0837 K10781 - gmx:100791281 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0837 17 6268478 6271125 Lal17g0837 17 6268478 6271125 ECH
Lal17g0837 17 6268478 6271125 Lal4g0705 4 5716012 5718908 LSH