Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal17g0556 | ATGTCGTTTTCTCGTTCGATTCTGACTTGTTCGTCATGGACTGGAGGGTGCACACTACCATCCACCACAAACAAGAAACCGCAGCTGAATGCGATTTCTCGCGTGAACGTTGCGAAGAGATTTTACGGAACACGATTGCGTTCAATGAAGCCTCCCGGATCGGAGAGGCTTCACATGTGGCAATCGGAGGGGCCTTGTAGGTCACCGAAGCTGAAGGTGTTGGTTCGGTCGTCAATGTCAGCGGTGCCGGAGAAGAGACTCGGACTTTACGATCCATCCATGGATAAGGACTCATGCGGTGTTGGATTCGTAGCTGAACTCTCAGGCGAAAGTAGCCGCAAAACGGTAACGGATGCATTGGAAATGTTGGTGCGAATGACGCATAGAGGAGGGTGTGGGTGCGAAGCCAACACAGGTGATGGGGCTGGGATTCTTGTCTCTCTACCTCACCACTTTTACAATCAGGTTGTGGATTTTGAGCTTCCGCCCCTAGGAAAATATGCAGTTGGCATGCTTTTCTTGCCTACATCTAACAGTCGTAGGGAAGAGAGCAAAAAAGTCTTTCAAAAGGTTGCTGAATCTCTGGGGCACTCTATTCTTGGTTGGCGTTCTGTGCCCACTGATAACACAGGATTGGGCAAATCAGCTGTGCACACTGAACCAGTGATCGAACAGGTGTTTCTTACTCCAAGTACTCAAGCAAAAGTAGATTTGGAAAGACAGATGTATATATTAAGGAAACTTTCCATGGTTGCGATTACATCTGCATTAAACCTCCATAATGATGGCATTACAGATTTCTATATCTGTTCACTTTCATCAAGGACGGTTGTTTACAAAGGTCAGTTAACACCAGCTCAGTTGAAGGACTACTATTTTGCAGACCTTGGCAATGAAAGGTTTACGAGCTACATGGCCCTGGTACATTCACGGTTTTCTACAAACACTTTTCCTAGCTGGGATCGTGCTCAACCTATGCGCGTACTGGGACATAATGGAGAAATCAACACACTTCGGGGCAATGTTAACTGGATGAAGGCACGTGAGGGCCTCCTGAAGTGCAAAGAGCTTGGTCTATCAGAAAATGATTTAAAGAGGCTTTTGCCCATTGTGAATGCAAAGTTATCTGATTCAGGAGCATTTGATGGTGTCCTTGAGTTTTTGGTTCAGTCTGGAAAAAGCCTTCCTGAAGCTGTCATGATGATGATTCCTGAAGCTTGGCAAAATGACAAAAACATGGATCCTCAGCGTAAAGCATTTTATGAATACTTCTCAGCTCTCATGGAGCCATGGGACGGGCCAGCTCTTATATCATTTACTGATGGTCACTATCTTGGAGCAACATTGGATAGAAATGGACTGCGTCCAGGCCGCTTTTATGTCACCCACAGTGGACGAGTAATAATGGCGAGTGAAGTTGGGGTTGTAGACATACCTCCTGAAGATGTGTCAAGGAAAGGAAGATTAAATCCTGGCATGATGCTTCTTGTGGATTTTGAGAAGCATATTGTTGTAAATGATGATGCCCTGAAGGAACAGTACTCTTTGGCAAGGCCCTATGGGGACTGGCTCAGAAAGCAGAAGATTGAACTGAAAGACATAGTTGACTCTGTTCATGAATCTGAAAGAGTGCCACCAACCATAGCAGGAGTTGTTCCAGCGTTTAGTGATGATGTGGATATGGAAAACATGGGAGTTCATGGCTTACTTGCTCCTTTGAAAGCTTTTGGCTATACAGTTGAATCCTTGGAAATGTTATTGCTTCCCATGGCAAAAGATGCAACGGAAGCCCTTGGGTCAATGGGAAATGACACTCCATTGGCTGTCATGTCTAATAGAGAAAAACTCACTTTTGAGTACTTCAAGCAAATGTTTGCCCAAGTGACAAACCCACCAATTGATCCTATCCGAGAGAAAATAGTCACTTCCATGCAATGTATGGTTGGTCCAGAAGGTGACCTGACAGAAACCACTGAGGAACAATGCCATCGCCTCTCACTAGAAGGTCCCCTTTTATCCATTGAAGAAATGGAAGCCATTAAAAAGATGAATTATAGGGGATGGCAGAGCAAGGTTATCGACATAACATACTCAAAGGACCGTGGTAAGAAAGGATTGGAGGAAGCATTGGACAGAATCTGTGCAGAAGCACATGATGCAATCAATAACGGTTATAAAATCCTTGTGCTGTCTGATAGAGCCTTCTCAAGGAAACATGTTGCTGTGAGCTCTCTCCTGGCTATTGGTGCTGTCAATCAACATCTAGTTAATAAACTTGAGCGCACAAGAGTTGCCTTAATGGTTGAATCGGCAGAGGCACGTGAGGTGCACCATTTCTCCACACTTGTGGGTTTTGGTGCTGATGCAGTCTGCCCATATTTGGCTGTAGAGGCAATTTTGCGACTGCAGGTCGACGGAAAGATCCCTCCAAAAGCAGGTGGTGAATTATACTCAAAAGATGAGCTGGTTAAGCAGTACTTTAAGGCAAGCAACTATGGAATGATGAAGGTGCTCGCAAAAATGGGAATATCTACTTTGGCCTCTTATAAAGGTGCTCAGATTTTTGAAGCTCTGGGTCTTTCATCAGAAGTAATTGAAAAGTGTTTTGCTGGAACCCCAAGTCGAGTTGAGGGTGCAACCTTTGAGATGCTTGCTCGTGATGCTCTTCAATTGCATGAATTGGCATTTCCTTCTCGGGCTTTCTCTCCTGGAAGTGCTGAAGCTGTAGCATTGCCAAATCCTGGGGATTATCATTGGAGAAAAGGTGGTGAAGTTCACCTGAATGATCCACTTGCCATATCAAAGCTTCAAGAGGCTGCCAGAACCAATAGCATAGATGCATATAAACAGTACTCCAAGCTCATTCATCAGTTAAATAAGGCTTGCAATTTGCGGGGACTTCTGAAATTTAAAAAGGCAGCAGTGGAGATTCCTCTTGATGAAGTAGAGTCAGCTAGTGAGATAGTTAAGCGGTTTTGCACTGGGGCCATGAGTTATGGGTCAATATCTCTTGAGGCACACACAACATTGGCAATTGCTATGAATAAACTTGGAGGGAAATCCAACACAGGTGAGGGAGGTGAGCAACCATCTCGTATGGAACCTCTTCCTGATGGTTCAAGGAACCCGAAAAGGAGTGCCATCAAGCAGATTGCTAGTGGGAGGTTTGGAGTTTCGAGTTACTATCTTACAAATGCAGACGAACTGCAAATAAAGATGGCTCAGGGAGCAAAACCTGGTGAGGGAGGTGAACTTCCTGGTCACAAGGTTATAGGAGATATTGCTGTCACCAGGAATTCAACCCCTGGGGTTGGACTTATCAGCCCACCACCTCATCATGATATTTATTCCATTGAAGATCTTGCCCAATTAATTCATGATCTAAAGAGTGCCAACCCTGCTGCTCGAATTAGTGTGAAGTTGGTATCTGAAGCTGGAGTTGGCGTAATAGCTAGTGGAGTTGTTAAAGGGCATGCCGACCATGTCTTGATCTCAGGCCATGATGGGGGTACAGGGGCATCCAGATGGACTGGCATTAAGAGTGCTGGGCTCCCTTGGGAACTTGGCTTGGCAGAGACCCACCAGACTTTGGTTGCTAATGACCTCCGTGGTCGGACAGTACTCCAAACTGATGGGCAACTCAAAACTGGAAGAGATGTGGCCATAGCTGCTCTTCTTGGTGCAGAAGAGTTTGGTTTCAGTACAGCTCCGCTAATGACTCTTGGTTGTATCATGATGCGGAAGTGCCACAAAAATACCTGTCCTGTTGGCATTGCTACCCAAGACCCAGTACTTAGAGAGAAGTTTGCTGGAGAACCTGAGCACGTCGTTAACTTCTTTTTCATGGTGGCTGAAGAGATGCGAGAAATCATGTCCCAGCTTGGGTTTCGGACTGTCAATGAGATGATTGGTCGTTCAGATATGCTTGAACTTGATAGAGAAGTCATTAATAGCAATGAGAAACTAGAGAACATCGACCTCTCTCTTCTGCTTAAACCTGCAGCTGAATTGCGTCCAGAAGCTGCTCAATACTGTGTACAAAAACAAGACCATGGTTTGGACATGCTCTTGGATAATAAACTTATAAGTTTGTCCAATGCTGCTTTGGAAAAGGGTCTTCCAGTATACATTGAAAGTCCAATCCGTAATGTAAATCGTTCTGTGGGGACTATGCTTAGTCACGAAGTGACTAAAAAGTACCACTTGGATGGTCTTCCTACTGACACCATTCATTGCAGATTTACTGGCAGTGCAGGCCAGAGCTTTGGTTCATTCCTCTGTCCAGGCATCACCTTGGAACTTGAAGGTGATGGCAATGACTATGTTGGTAAAGGATTGTCAGGTGGCAAGATTGTAGTATATCCTCCAAAGGAAAGTACTTTTGACCCTAAGAATAATATTGTAATTGGTAATGTTGCCTTGTATGGGGCCACAAAAGGGGAGGCGTATTTCAATGGAATGGCAGCAGAAAGGTTTTCTGTGCGTAATTCTGGGGCTAAGGCAGTAGTGGAAGGTGTTGGTGATCATGGATGTGAGTACATGACTGGTGGGATAGTTGTTGTGCTCGGAATCACTGGTAGAAATTTTGCTGCAGGGATGAGTGGTGGAGTTGCTTATGTTCTTGATATAGATGGGAAATTCCACTCTCGGTGCAACCATGAGCTTGTAGATCTTGATAAGGTTGAAGAGGAGGAGGATGTTGTTACTCTCAAAATGTTAATTCAACAACATCAGCGTCACACAAATAGTGTGTTTGCGAAAGAAGTGCTTGATGACTTTGACAATCTTGTTCCAAAATTTATAAAGGTCATCCCCAGGGACTATAAACGTGTTTTGGCTAGTATGAAGTTAAAGGAAGCCTCTGCTAAAGATGAAGCAGAACTGGTAGGAAAAGATGCATTTGAAGAGCTTAAGAAACTGGCTGATTCATCTCTGAATGGGAAACCGAATCAGGCTGAGTCATCTAACAGGCCTAGTCAAGTCATTGATGCTGTTAAACATGGAGGTTTTGTTGCTTATGAGCGTGAAGGTGTTCAGTATAGGGATGCTAATGTTCGAATGACCGATTGGAACGAAGTGATGGAGGAGACAAAACCTGGTCCACTTTTGAAAACCCAGTCAGCCCGTTGCATGGATTGTGGTACTCCCTTCTGTCATCAGGAAAATTCTGGATGTCCTCTTGGAAATAAAATACCAGAATTTAACGAGTTAGTATACCAAAATCGGTGGCGTGAGGCATTAGATAGGCTTCTCGAGACCAATAACTTCCCAGAGTTTACTGGTCGGGTGTGTCCAGCTCCTTGTGAAGGTTCTTGTGTCCTTGGTATTATTGAGAATCCAGTATCTATTAAAAATATTGAATGTGCTATCATAGACAAGGCTTTTGAGGAGGGTTGGATGGTGCCACGTCCTCCATCCAAGAGAACAGGGAAAAAAGTTGCCATTGTTGGAAGTGGACCGGCTGGTCTTGCAGCTGCTGATCAACTAAATAAAATGGGCCATATTGTATCTGTGTATGAAAGATCTGATAGGATTGGAGGGCTTATGATGTATGGCGTTCCCAACATGAAAGCTGACAAAGTGGATACAGTTCAACGGCGAGTCAATCTTATGGCAGAGGAAGGAGTTAATTTTGTAGTGAATGCCAATGTTGGGCATGATCCTTTATACTCTCTTGATCGGCTCAGAGCGGAAAACGATGCTATTATCTTGGCTGTAGGAGCCACAAAACCAAGGGATCTTCCAGTGCCTGGGCGGGAGCTGTCAGGAGTTCATTTTGCCATGGAACTCCTTCATGCGAACACTAAAAGCTTGCTTGATAGCAATCTCCAGGATGGTAACTATATTTCCGCCAAGGGCAAGAAAGTTGTGGTCATTGGCGGGGGTGACACGGGCACAGATTGCATTGGGACATCCATCCGTCATGGGTGTAATAGCATTGTAAATCTGGAACTTCTCCCTCAGCCACCACAAACCAGAGCCCCAGGCAACCCTTGGCCACAGTGGCCTCGCATATTCCGTGTAGATTACGGGCACCATGAAGCTACAGCTAAATTTGGCAAAGATCCAAGATCTTATGAGGTATTGACTAAGCGGTTTATAGGAGATGAAAATGGAGCCGTGAAGGGACTTGAAGTGATACATGTACGCTGGGAGAAGGATGAAACTGGAAAGTTTCAGTTTAAGGAAATTGAAGGATCTGAGGAGATTATTGAGGCCGACCTAGTTTTACTGGCCATGGGATTCCTTGGCCCTGAGCCTACAATTGCAGAGAAACTGGGCATGGAGCAAGACAATAGGTCAAATTTCAAAGCTGATTATGGTCGCTTCTCAACCACTGTCAAAGGTGTGTTTGCAGCTGGGGATTGTCGCCGAGGTCAGTCCCTGGTTGTATGGGCAATTTCGGAAGGACGACAAGCTGCTGCACAAGTTGACAGTTACCTTGTAAAAGATGACTCAAATCACAATGTTTCTGGGAATTCGGACTACGTTATCAAGAGGCAGCAGGAGCTCACTAAGAGGCAGCAGGGCAAACACACAGTGGCAACTTAA | 6552 | 0.4498 | MSFSRSILTCSSWTGGCTLPSTTNKKPQLNAISRVNVAKRFYGTRLRSMKPPGSERLHMWQSEGPCRSPKLKVLVRSSMSAVPEKRLGLYDPSMDKDSCGVGFVAELSGESSRKTVTDALEMLVRMTHRGGCGCEANTGDGAGILVSLPHHFYNQVVDFELPPLGKYAVGMLFLPTSNSRREESKKVFQKVAESLGHSILGWRSVPTDNTGLGKSAVHTEPVIEQVFLTPSTQAKVDLERQMYILRKLSMVAITSALNLHNDGITDFYICSLSSRTVVYKGQLTPAQLKDYYFADLGNERFTSYMALVHSRFSTNTFPSWDRAQPMRVLGHNGEINTLRGNVNWMKAREGLLKCKELGLSENDLKRLLPIVNAKLSDSGAFDGVLEFLVQSGKSLPEAVMMMIPEAWQNDKNMDPQRKAFYEYFSALMEPWDGPALISFTDGHYLGATLDRNGLRPGRFYVTHSGRVIMASEVGVVDIPPEDVSRKGRLNPGMMLLVDFEKHIVVNDDALKEQYSLARPYGDWLRKQKIELKDIVDSVHESERVPPTIAGVVPAFSDDVDMENMGVHGLLAPLKAFGYTVESLEMLLLPMAKDATEALGSMGNDTPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMQCMVGPEGDLTETTEEQCHRLSLEGPLLSIEEMEAIKKMNYRGWQSKVIDITYSKDRGKKGLEEALDRICAEAHDAINNGYKILVLSDRAFSRKHVAVSSLLAIGAVNQHLVNKLERTRVALMVESAEAREVHHFSTLVGFGADAVCPYLAVEAILRLQVDGKIPPKAGGELYSKDELVKQYFKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIEKCFAGTPSRVEGATFEMLARDALQLHELAFPSRAFSPGSAEAVALPNPGDYHWRKGGEVHLNDPLAISKLQEAARTNSIDAYKQYSKLIHQLNKACNLRGLLKFKKAAVEIPLDEVESASEIVKRFCTGAMSYGSISLEAHTTLAIAMNKLGGKSNTGEGGEQPSRMEPLPDGSRNPKRSAIKQIASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVIGDIAVTRNSTPGVGLISPPPHHDIYSIEDLAQLIHDLKSANPAARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASRWTGIKSAGLPWELGLAETHQTLVANDLRGRTVLQTDGQLKTGRDVAIAALLGAEEFGFSTAPLMTLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVVNFFFMVAEEMREIMSQLGFRTVNEMIGRSDMLELDREVINSNEKLENIDLSLLLKPAAELRPEAAQYCVQKQDHGLDMLLDNKLISLSNAALEKGLPVYIESPIRNVNRSVGTMLSHEVTKKYHLDGLPTDTIHCRFTGSAGQSFGSFLCPGITLELEGDGNDYVGKGLSGGKIVVYPPKESTFDPKNNIVIGNVALYGATKGEAYFNGMAAERFSVRNSGAKAVVEGVGDHGCEYMTGGIVVVLGITGRNFAAGMSGGVAYVLDIDGKFHSRCNHELVDLDKVEEEEDVVTLKMLIQQHQRHTNSVFAKEVLDDFDNLVPKFIKVIPRDYKRVLASMKLKEASAKDEAELVGKDAFEELKKLADSSLNGKPNQAESSNRPSQVIDAVKHGGFVAYEREGVQYRDANVRMTDWNEVMEETKPGPLLKTQSARCMDCGTPFCHQENSGCPLGNKIPEFNELVYQNRWREALDRLLETNNFPEFTGRVCPAPCEGSCVLGIIENPVSIKNIECAIIDKAFEEGWMVPRPPSKRTGKKVAIVGSGPAGLAAADQLNKMGHIVSVYERSDRIGGLMMYGVPNMKADKVDTVQRRVNLMAEEGVNFVVNANVGHDPLYSLDRLRAENDAIILAVGATKPRDLPVPGRELSGVHFAMELLHANTKSLLDSNLQDGNYISAKGKKVVVIGGGDTGTDCIGTSIRHGCNSIVNLELLPQPPQTRAPGNPWPQWPRIFRVDYGHHEATAKFGKDPRSYEVLTKRFIGDENGAVKGLEVIHVRWEKDETGKFQFKEIEGSEEIIEADLVLLAMGFLGPEPTIAEKLGMEQDNRSNFKADYGRFSTTVKGVFAAGDCRRGQSLVVWAISEGRQAAAQVDSYLVKDDSNHNVSGNSDYVIKRQQELTKRQQGKHTVAT | 2183 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal17g0556 | 2183 | PANTHER | FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE | 75 | 2155 | - | - | |
| Lal17g0556 | 2183 | Pfam | GXGXG motif | 1380 | 1566 | IPR002489 | GO:0016491 | |
| Lal17g0556 | 2183 | SUPERFAMILY | FAD/NAD(P)-binding domain | 1808 | 2148 | IPR036188 | - | |
| Lal17g0556 | 2183 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 17 | - | - | |
| Lal17g0556 | 2183 | SUPERFAMILY | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 99 | 526 | IPR029055 | - | |
| Lal17g0556 | 2183 | CDD | GltS_FMN | 930 | 1311 | IPR002932 | GO:0006537|GO:0015930|GO:0016638 | |
| Lal17g0556 | 2183 | Pfam | Conserved region in glutamate synthase | 928 | 1297 | IPR002932 | GO:0006537|GO:0015930|GO:0016638 | |
| Lal17g0556 | 2183 | Gene3D | - | 1660 | 1810 | IPR009051 | GO:0051536 | |
| Lal17g0556 | 2183 | Pfam | Glutamate synthase central domain | 573 | 861 | IPR006982 | GO:0006807|GO:0015930 | |
| Lal17g0556 | 2183 | Pfam | Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster | 1688 | 1798 | IPR028261 | - | |
| Lal17g0556 | 2183 | Pfam | Glutamine amidotransferases class-II | 99 | 523 | IPR017932 | - | |
| Lal17g0556 | 2183 | PANTHER | GLUTAMATE SYNTHASE 1 [NADH], CHLOROPLASTIC | 75 | 2155 | - | - | |
| Lal17g0556 | 2183 | MobiDBLite | consensus disorder prediction | 1019 | 1044 | - | - | |
| Lal17g0556 | 2183 | Gene3D | - | 1921 | 2081 | IPR036188 | - | |
| Lal17g0556 | 2183 | SUPERFAMILY | FMN-linked oxidoreductases | 567 | 1330 | - | - | |
| Lal17g0556 | 2183 | Pfam | Pyridine nucleotide-disulphide oxidoreductase | 1811 | 2137 | IPR023753 | GO:0016491 | |
| Lal17g0556 | 2183 | Gene3D | - | 1811 | 1920 | - | - | |
| Lal17g0556 | 2183 | Gene3D | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 99 | 535 | IPR029055 | - | |
| Lal17g0556 | 2183 | CDD | GltS | 99 | 518 | - | - | |
| Lal17g0556 | 2183 | CDD | gltB_C | 1357 | 1606 | IPR002489 | GO:0016491 | |
| Lal17g0556 | 2183 | TIGRFAM | GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit | 1666 | 2150 | IPR006005 | GO:0006537|GO:0016639 | |
| Lal17g0556 | 2183 | PRINTS | Adrenodoxin reductase family signature | 1812 | 1834 | - | - | |
| Lal17g0556 | 2183 | PRINTS | Adrenodoxin reductase family signature | 1835 | 1848 | - | - | |
| Lal17g0556 | 2183 | PRINTS | Adrenodoxin reductase family signature | 1878 | 1888 | - | - | |
| Lal17g0556 | 2183 | PRINTS | Adrenodoxin reductase family signature | 1956 | 1970 | - | - | |
| Lal17g0556 | 2183 | Gene3D | - | 1353 | 1624 | IPR036485 | GO:0016491 | |
| Lal17g0556 | 2183 | PIRSF | GOGAT | 24 | 2177 | IPR012220 | GO:0005506|GO:0006537|GO:0010181|GO:0016040|GO:0050660 | |
| Lal17g0556 | 2183 | Gene3D | Aldolase class I | 913 | 1351 | IPR013785 | - | |
| Lal17g0556 | 2183 | ProSiteProfiles | Glutamine amidotransferase type 2 domain profile. | 99 | 500 | IPR017932 | - | |
| Lal17g0556 | 2183 | SUPERFAMILY | Alpha subunit of glutamate synthase, C-terminal domain | 1349 | 1613 | IPR036485 | GO:0016491 | |
| Lal17g0556 | 2183 | Gene3D | Aldolase class I | 552 | 912 | IPR013785 | - | |
| Lal17g0556 | 2183 | SUPERFAMILY | alpha-helical ferredoxin | 1664 | 1821 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal17g0556 | Lal-Chr17 | 3918625 | 3933247 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal17g0556 | K00264 | - | gmx:100815931 | 3869.7 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal17g0556 | 17 | 3918625 | 3933247 | Lal4g0485 | 4 | 3441178 | 3453907 | LSH |