Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0179 ATGAGCGGCGACGAGAGGTGGTGCGTGGTCACCGGAGGCCGTGGCTTCGCGGCTCGTCATCTGGTAGAAATGCTAATCCAGCGCAACATGTACTCCGTTCGCATCGCCGATTTAGGATCCACCATAGAGCTCGAACCCTCCGAGCAATTAGGCATTCTTGGCGAAGCTTTAACCTCTGGACGAGCTCAATACATAACTCTCGATCTTCGCAATAAGGAGCAAGTCTTGAAAGCGTGTGAAGGTGCTGAAGTTGTGTTTCACATGGCTGCTCCTAACTCTTCCATTAATAGCTTCCAACTCCATCAATCTGTCAATGTACAAGGTACGAAGAATGTGATTGATGCTTGTTTAGAGCTTAAAGTGAAGCGACTTATTTATACTAGCTCTCCTAGCGTTGTCTTTGACGGTGTTCATGGAATTCATAATGGAAATGAAACATTGCCCTATCCACCTTCGCATAACGATCATTATTCTGCAACTAAAGCTGAGGGTGAAGGATTGGTTATTAAGGCCAATGGGAAGGATGGACTCCTAACATGCTGCATACGGCCTAGCAGCATTTTCGGGCCTGGCGATAAACTGCTCGTGCCTTCGTTAGTTGATGCTGCCAGGGCAGGGAAATCCAAGTTCATTATTGGCGATGGCAATAATCTTTATGATTTCACTTATGTTGAAAACGTGGCTCATGCTCATATCTGTGCTGAACGAGCTCTGGCTTCAGAGGGGACAGTTTCAGAAAAAGCTGCAGGAGAGGCATATTTCATAACGAATATGGAGCCTATAAAGTTTTGGGAGTTCCTGTCACTGATCCTGGAAGGTCTTGGATATGAAAGGCCTAGAATAAAGATCCCTGCCTCTGTTATCATGCCGATTGCACATTTGGTGGAGTTAATATATAAGCTGCTAGGACCATATGGAATGAAGGTGCCACAGTTTACACCCTCAAGAGTAAGACTCTTGTCTTGCAGTAGATCGTTCGATTGCTCAAAAGCAAAAGATCGCCTTGGCTATGCACCCATCGTAACACTACAGGAGGGTCTTCGGAGGACGATTGAATCATACCCACACCTGAGGGCTGAAAGTCAACCTAAAACCAGAAGAGAAGGACCCTCAAAAGCTTCCATATACCTTGGAAGAGGAAGAGTTGCTGACACATTGCTTTGGAAGGATAGAAAGCAAACTTTCACCACATTGTTAGTCCTGGCTGCAATATACTTCAACTTCATTGCATCTGGAAACACCATCATTACTGCTATTTCAAAGCTTCTATTATTCATATCAATCTTTTTATTCATTCATGGCATTCTACCTGCAAAGATATTGGGGTATACTATTGAGAAAATACCTACATCATGGTTTCACTTATCAGAAGATATGTCTCATCAAATTGCTCTCTCAGTGGCCTCATCTTGGAATTTTGTTGTGAAAGTTTTAAAATCTCTTGCACAAGGAAATAACTTGGAGCTGTTCTCTAAGGTTGTTCTCTCTCTGGTTATCCTTAGTTTCCTTGGAGGCTTTTCACTTCAGAACCTATATACCATAGGTCTTGCCTTTGTGTTTGTAGCTTTCTATGTTTATGAAAAGAAGGAAGAAGACATTGATGGCATATTCATGACAATACATTCTTTTGGATGCAAGTTAAAATCCGATTTCACCAGGAAGTTTCTTCTTTCAAAGAAGATTGATTGA 1689 0.4269 MSGDERWCVVTGGRGFAARHLVEMLIQRNMYSVRIADLGSTIELEPSEQLGILGEALTSGRAQYITLDLRNKEQVLKACEGAEVVFHMAAPNSSINSFQLHQSVNVQGTKNVIDACLELKVKRLIYTSSPSVVFDGVHGIHNGNETLPYPPSHNDHYSATKAEGEGLVIKANGKDGLLTCCIRPSSIFGPGDKLLVPSLVDAARAGKSKFIIGDGNNLYDFTYVENVAHAHICAERALASEGTVSEKAAGEAYFITNMEPIKFWEFLSLILEGLGYERPRIKIPASVIMPIAHLVELIYKLLGPYGMKVPQFTPSRVRLLSCSRSFDCSKAKDRLGYAPIVTLQEGLRRTIESYPHLRAESQPKTRREGPSKASIYLGRGRVADTLLWKDRKQTFTTLLVLAAIYFNFIASGNTIITAISKLLLFISIFLFIHGILPAKILGYTIEKIPTSWFHLSEDMSHQIALSVASSWNFVVKVLKSLAQGNNLELFSKVVLSLVILSFLGGFSLQNLYTIGLAFVFVAFYVYEKKEEDIDGIFMTIHSFGCKLKSDFTRKFLLSKKID 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0179 562 PANTHER 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1 4 368 - -
Lal17g0179 562 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 9 283 IPR002225 GO:0003854|GO:0006694|GO:0016616
Lal17g0179 562 Gene3D - 2 358 - -
Lal17g0179 562 Pfam Reticulon 382 537 IPR003388 -
Lal17g0179 562 ProSiteProfiles Reticulon domain profile. 382 534 IPR003388 -
Lal17g0179 562 CDD 3b-HSD-NSDHL-like_SDR_e 7 354 - -
Lal17g0179 562 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 354 IPR036291 -
Lal17g0179 562 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 4 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0179 Lal-Chr17 1087055 1092867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0179 9 371 Lipid Metabolism Gene Families AT2G33630 32.898 1.27e-49 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0179 K23558 - gmx:100799363 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0179 17 1087055 1092867 Lal17g0179 17 1087055 1092867 ECH
Lal17g0179 17 1087055 1092867 Lal21g0290 21 1922469 1929179 LSH