Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1833 ATGATGGGAGTTTCAGAGAGTAAGCTTCATCTTCATCTTCATCTCCCACTATTCATCTTTGTCATTGTTTTCTCCTTCGACAATGCTCTCTGCATCAGATTCCCCGATCGGGTTCACCCATCGGACCACCACCACCAACGGTTCAACACAGCCGTCTTCGCTCTCGGAAGCTTCTGGAGATCCGAAGCAGTGTTCGGCTGTCTTCCCGGCGTTATTCGAACCACCGTTGGCTACGCCGGCGGATCTAAGCACAACCCCCGATATAGAACCTTCGGTGACCACGCCGAGTCCGTTCAGGTTCAGTATGATCCAGGGATGACTAGTTTTAAGGAGCTCTTGGATATCTTTTGGTCATGCCATGATCCGAGGCAAGTGTACGGCCAAGGTCCCGATGTGGGTAATCAGTACAGATCTATTATTTTTGTTAATGGAACTGAAGAATCAAGAATTGCTTCTGTCAGCAAAGAACAAGAACAGGCCAGGTCAAGAAGCAGCATTGTAACTACTCAAATTCTACAACTTGGAACATTCTATCCCGCAGAACCAGAGCACCAGCTCAGGGATGAGGAAGATGACGTTTTCAATGGTGGTTCACTTGGAACTGAGTATCAATACGCGAATCGGGGCATATTGAAATTTGAACTCAAGAAAAATTCCTTCCTTATTAAGCTTATTGGGAACCTGCATGAGGAGGAGCTTGAGAGGTCAAGCCTAGCAACAAAATTAAATGGATATGTTGCTGAACTTTGCCCTCCAAATATCCAAAAGCATATTGATGCAAAGATCAATGAGATTGTTAAAAAAGGTTGGCCTATTTTGAGGGAATTGTAG 831 0.4525 MMGVSESKLHLHLHLPLFIFVIVFSFDNALCIRFPDRVHPSDHHHQRFNTAVFALGSFWRSEAVFGCLPGVIRTTVGYAGGSKHNPRYRTFGDHAESVQVQYDPGMTSFKELLDIFWSCHDPRQVYGQGPDVGNQYRSIIFVNGTEESRIASVSKEQEQARSRSSIVTTQILQLGTFYPAEPEHQLRDEEDDVFNGGSLGTEYQYANRGILKFELKKNSFLIKLIGNLHEEELERSSLATKLNGYVAELCPPNIQKHIDAKINEIVKKGWPILREL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1833 276 Hamap Peptide methionine sulfoxide reductase MsrA [msrA]. 48 202 IPR002569 GO:0008113
Lal16g1833 276 TIGRFAM msrA: peptide-methionine (S)-S-oxide reductase 50 185 IPR002569 GO:0008113
Lal16g1833 276 Gene3D Peptide methionine sulphoxide reductase MsrA 43 269 IPR036509 GO:0008113
Lal16g1833 276 SUPERFAMILY Peptide methionine sulfoxide reductase 28 185 IPR036509 GO:0008113
Lal16g1833 276 PANTHER PEPTIDE METHIONINE SULFOXIDE REDUCTASE A5 10 275 - -
Lal16g1833 276 Pfam Peptide methionine sulfoxide reductase 50 185 IPR002569 GO:0008113
Lal16g1833 276 PANTHER MITOCHONDRIAL PEPTIDE METHIONINE SULFOXIDE REDUCTASE 10 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1833 Lal-Chr16 17447037 17449161 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1833 K07304 - gmx:100782739 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1833 16 17447037 17449161 Lal16g1833 16 17447037 17449161 ECH
Lal15g1506 15 17182673 17186288 Lal16g1833 16 17447037 17449161 LSH