Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1518 ATGGCACCCTCTTACTGTGTGAAGGATGAGAGACCTTGTGTGAGATGGGTACATAAATACTTCAAAGATTGTCTTTGCAATACTAGAGATGATATCTCCTTCGGTTTTGGGCTCATCAGTTTAGTGTGTTGGGGAGTGGCAGAAATTCCTCAGATTATAACCAATTTTGGCACCAAATCCAGTCATGGAGTTTCCCTTGCCTTTCTTTTCACATGGATAGCTGGTGACATATTCAACTTGATGGGTTGCCTTCTGGAACCAGCGACGTTGCCCACTCAGTTCTACACAGCTCTGCTTTACACAACAACTACGATCGTACTAGTATTGCAAAGCTTATATTATGACTACATCTATAGATGGTGCAAATCTCGTCGGAAGGTCAACAACAAAGGAGGGGTTCTTGAAGAAGAGAAGAGACCTTTGAAACCGAAATCCAGTCACCAGTCAGGGATTCCTATACCAGATGGCACAACCAAGGCAGCACATCGACGAGAGTACTTCTTTACGTCAGCAAGATCGTTGGCTGGGAGTGGAACTCCACCGTTCCGTACTTACCTGAGAGCTGTTAAAAGTGGCCCTTCAGCCATGGAATTGAACGGAGACTATTCTTCTGATGATGAGCCCTCTCCAAATACTTCTAACAATTCTTCATCTCACCCTAGGCCCATCCCACGTTCTGTGGCTGGAATTTATGGAACATTTCTAGCAGCATCAGTTAACTTGCCCCTGCAGGGTAATGCTTTGAGAGAAGGACATATATTATTTAGTGGAAGAAAGCTGTTGCAGGAGCAAGAGATACATAGTACATTTGGTCAATGGTTGGGATGGCTTATGGCTGCTATATATATGGGTGGTCGCATACCTCAGATATGGTTAAATATTAAAAGAGGCAGTGTGGAGGGATTAAATCCACTCATGTTTGTCTTCGCACTTATTGCTAATGTCACCTATGTGGGAAGTATTGTTGTACGAACAACAGAATGGGAAAGCATCAAAGCTAATATGCCATGGTTGTTAGATGCAGTAGTTTGCGTGGCACTAGACTTTTTTATAATAATGCAGTATATCTACTACAGATATGTTCGGAGGAGAGCAGAAAGTGATGAAGGAGACTATCAAGAAGCAAGAAAATTTGTTGTGTCTTGA 1146 0.4276 MAPSYCVKDERPCVRWVHKYFKDCLCNTRDDISFGFGLISLVCWGVAEIPQIITNFGTKSSHGVSLAFLFTWIAGDIFNLMGCLLEPATLPTQFYTALLYTTTTIVLVLQSLYYDYIYRWCKSRRKVNNKGGVLEEEKRPLKPKSSHQSGIPIPDGTTKAAHRREYFFTSARSLAGSGTPPFRTYLRAVKSGPSAMELNGDYSSDDEPSPNTSNNSSSHPRPIPRSVAGIYGTFLAASVNLPLQGNALREGHILFSGRKLLQEQEIHSTFGQWLGWLMAAIYMGGRIPQIWLNIKRGSVEGLNPLMFVFALIANVTYVGSIVVRTTEWESIKANMPWLLDAVVCVALDFFIIMQYIYYRYVRRRAESDEGDYQEARKFVVS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1518 381 MobiDBLite consensus disorder prediction 204 222 - -
Lal16g1518 381 MobiDBLite consensus disorder prediction 197 223 - -
Lal16g1518 381 Gene3D - 270 373 - -
Lal16g1518 381 Gene3D - 35 128 - -
Lal16g1518 381 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 1 378 - -
Lal16g1518 381 MobiDBLite consensus disorder prediction 132 158 - -
Lal16g1518 381 PANTHER PQ-LOOP PROTEIN/TRANSMEMBRANE FAMILY PROTEIN 1 378 - -
Lal16g1518 381 Pfam PQ loop repeat 32 88 IPR006603 -
Lal16g1518 381 Pfam PQ loop repeat 271 328 IPR006603 -
Lal16g1518 381 SMART ctns 46 77 IPR006603 -
Lal16g1518 381 SMART ctns 284 315 IPR006603 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1518 Lal-Chr16 12296565 12308119 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1518 K23678 - gmx:100787660 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1518 16 12296565 12308119 Lal16g1518 16 12296565 12308119 ECH
Lal23g1381 23 14483773 14486271 Lal16g1518 16 12296565 12308119 PCT
Lal16g1518 16 12296565 12308119 Lal23g1381 23 14483773 14486271 PCT