Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1203 ATGGGACACGGTGACAAAACTCGACCCTTCAAAAAGCTCAAATCCTCCAAATTCGTTAGTTCACTTTACGCATCTTTCAATTTCTTTTTCCTTGTTCGTTTTGCGTTTGTTTCTCTCATTATATTGTTGTTTCAGGAAGATTCCCGAAAAGGATTTGGGGATGATGATGACGGTTATGGAGGCGATGATGGATACGACGGTGAAGATACTAAAACCAAAGATTTTAGCAAATTAGAGCTGAAACCTGATCACCCTAATCGTCCTTTGTGGGCTTGTGGCAATGGCCGCATTTTCCTTGAGACTTTCTCACCTTTGTATAAGCAAGCCTACGATTTCCTTATTGCCATCGCCGAACCTGTTTGCAGGCCAGAGTCGATGCATGAGTACAATCTTACTCCGCATTCACTCTATGCTGCGGTTTCTGTTGGTCTAGAAACAGAAACGATCGTAGCTGTTTTGAACAAATTGTCCAAGACCAAGCTTCCCAAAGACATGATTAAGTTCATACATGATTCTACTGCAAATTATGGCAAAGTGAAGCTTGTGCTTAAGAAGAATCGCTACTTTATTGAATCTCCGTTTCCTGAGGTATTGAAGACATTGCTGCGGGATGGTACTATAGCTCAATCAAGGATTTCTTCGGAGGGTGCAAATGAAGATGGATTTACTATCAGTAAAGCAGCAGGTGAAATTTCTGGCACTCATGACGAGTTGATAAATGGAGCAGAAGTGGCAGCGGCTGCAGAAGAGAAAGAAGCTCATTCATTTGAAATTGATCCTTCTCAGGTTGAAAATGTAAAGCAACGCTGCTTGCCAAATGCACTAAATTATCCCATGTTGGAGGAGTATGACTTCAGAAATGATACAGTGAATCCAGACCTTGACATGGAACTAAAGCCTCAAGCACAACCTCGTCCATATCAAGAGAAGAGCCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGTATAATAGTTCTACCCTGTGGTGCTGGAAAGTCCCTTGTTGGTGTTTCTGCAGCTTGCCGGATAAAAAAGAGTTGTCTTTGTTTGGCGACAAATGCTGTCTCCGTGGATCAGTGGGCTTTTCAGTTTAAACTATGGTCAACTATCCGAGAGGAACAAATATGTCGTTTTACATCTGATAGCAAAGAGAGATTCCGTGGTAATGCTGGAGTTGTTGTGACAACCTATAATATGGTTGCTTTTGGTGGTAAACGGTCTGAAGAATCTGAAAAGATCATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTCCTCATGGATGAGGTGCATGTGGTTCCGGCCCATATGTTTCGTAAGGTCATTAGTATCACTAAGTCTCACTGCAAACTTGGGCTTACAGCCACACTTGTTAGAGAGGACGAAAGGATTACAGATCTGAACTTCCTCATTGGTCCCAAGCTGTATGAGGCAAATTGGATAGATCTAGTAAAAGGTGGATTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACAAAAGAGTTTTTCGCCGAGTATTTGAAGAAAGAGAACTCCAAGAAGAGACAGGCACTTTATGTGATGAATCCAAATAAGTTCAGAGCATGTGAGTTTCTCATAAATTACCATGAAAGGGCACGTGGTGATAAAATTATTGTCTTTGCTGATAATCTTTTCGCTCTCACTGAGTATGCCATGAAACTCCGCAAACCAATGATATATGGTGCTACAAGCCATGTTGAGAGGACAAAAATTCTACAAGCATTCAAAACTAGCAAAGACGTTAACACTGTTTTTCTCTCCAAGGTGGGTGATAACTCCATTGATATTCCTGAAGCAAATGTGATAATTCAAATTTCTTCACATGCTGGATCAAGGCGTCAAGAAGCCCAACGTCTAGGTCGTATTCTTAGGGCAAAGGGAAAGCTTCAGGACAGGATGGCTGGGGGTAAAGAGGAATATAATGCATTTTTTTATTCCCTTGTATCAACTGATACCCAGGAAATGTATTACTCAACTAAGAGGCAGCAATTTTTAATTGATCAAGGTTATAGCTTTAAGGTAATTACCAGCTTGCCTCCATCTGATGAAGGACCTAGTTTGAGCTATCATCATCTTGAGGATCAATTAGCACTTCTTGGAAAGGTATTGAGTGCTGGTGATGATGCAGTTGGATTAGAACAACTAGATGAAGATACAGATGAAATAGCCCTTAATAGTGCTCGTCGTTCTCAAGGATCCATGAGTGCAATGTCAGGTGCAAAAGGGATGGTTTACATGGAATACAGTACTGGGCGTCACAAAGGCCAAGGACAAATCAAGAGCAAGCCAAAAGATCCAGCAAAGAGGCATCAATTGTTTAAAAAGCGATTCGGCTCCACCTGA 2379 0.4124 MGHGDKTRPFKKLKSSKFVSSLYASFNFFFLVRFAFVSLIILLFQEDSRKGFGDDDDGYGGDDGYDGEDTKTKDFSKLELKPDHPNRPLWACGNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIVAVLNKLSKTKLPKDMIKFIHDSTANYGKVKLVLKKNRYFIESPFPEVLKTLLRDGTIAQSRISSEGANEDGFTISKAAGEISGTHDELINGAEVAAAAEEKEAHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWIDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGPSLSYHHLEDQLALLGKVLSAGDDAVGLEQLDEDTDEIALNSARRSQGSMSAMSGAKGMVYMEYSTGRHKGQGQIKSKPKDPAKRHQLFKKRFGST 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1203 792 Gene3D - 486 726 IPR027417 -
Lal16g1203 792 CDD DEXHc_XPB 296 465 - -
Lal16g1203 792 PRINTS Xeroderma pigmentosum group B protein signature 87 107 - -
Lal16g1203 792 PRINTS Xeroderma pigmentosum group B protein signature 173 192 - -
Lal16g1203 792 PRINTS Xeroderma pigmentosum group B protein signature 285 311 - -
Lal16g1203 792 PRINTS Xeroderma pigmentosum group B protein signature 316 338 - -
Lal16g1203 792 PRINTS Xeroderma pigmentosum group B protein signature 423 443 - -
Lal16g1203 792 PRINTS Xeroderma pigmentosum group B protein signature 489 511 - -
Lal16g1203 792 PRINTS Xeroderma pigmentosum group B protein signature 527 542 - -
Lal16g1203 792 PRINTS Xeroderma pigmentosum group B protein signature 547 569 - -
Lal16g1203 792 PRINTS Xeroderma pigmentosum group B protein signature 594 612 - -
Lal16g1203 792 PRINTS Xeroderma pigmentosum group B protein signature 613 638 - -
Lal16g1203 792 PRINTS Xeroderma pigmentosum group B protein signature 650 673 - -
Lal16g1203 792 PRINTS Xeroderma pigmentosum group B protein signature 741 760 - -
Lal16g1203 792 Pfam Type III restriction enzyme, res subunit 303 459 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lal16g1203 792 CDD SF2_C_XPB 496 660 - -
Lal16g1203 792 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 532 698 IPR001650 -
Lal16g1203 792 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 735 IPR027417 -
Lal16g1203 792 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 315 477 IPR014001 -
Lal16g1203 792 MobiDBLite consensus disorder prediction 763 792 - -
Lal16g1203 792 Pfam ERCC3/RAD25/XPB C-terminal helicase 485 733 IPR032438 -
Lal16g1203 792 Pfam Helicase conserved C-terminal domain 89 212 IPR032830 -
Lal16g1203 792 Gene3D - 294 485 IPR027417 -
Lal16g1203 792 PANTHER DNA REPAIR HELICASE XPB1-LIKE 72 789 - -
Lal16g1203 792 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 479 IPR027417 -
Lal16g1203 792 PANTHER RAD25/XP-B DNA REPAIR HELICASE 72 789 - -
Lal16g1203 792 SMART helicmild6 560 638 IPR001650 -
Lal16g1203 792 SMART ultradead3 300 481 IPR014001 -
Lal16g1203 792 TIGRFAM rad25: DNA repair helicase rad25 247 787 IPR001161 GO:0003678|GO:0006289|GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1203 Lal-Chr16 8340212 8349496 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1203 K10843 - gmx:100789550 1375.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1203 16 8340212 8349496 Lal16g1203 16 8340212 8349496 ECH
Lal16g1203 16 8340212 8349496 Lal15g1407 15 16204673 16212849 LSH