Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g1407 ATGGGACATGGTGACAAAAATCGACCCTTCAAAAAGCTCAAATCCAACACCAAATTCGATGATTATCGGAAAGGATTTGTGGAGGACGATGACGATGATGGGTACGATGATGAAGATACTAAAACCAAAGATTTTAGCAAATTAGAACTTAAACCCGATCACCCCAATCGCCCACTTTGGGCTTGTGGCAATGGCCGCATTTTCCTGGAGACTTTCTCTCCTTTGTATAAGCAAGCCTACGATTTTCTTATTGCCATCGCCGAACCAGTATGCAGGCCGGAGTCGATGCACGAATACAATCTTACTCCACATTCACTCTATGCCGCGGTTTCTGTTGGTCTAGAAACAGAAACGATCGTAGCTGTTTTGAACAAGTTGTCCAAGACCAAGCTTCCCAAAGACATGATTAAGTTCATACATGATTCTACTGCAAATTATGGCAAAGTGAAGCTTGTGCTTAAGAAGAATCGCTACTTTATTGAATCTCCGTTTCCTGAGGTATTGAAGACATTGCTTCGGGATGGAACTATAGCTCAAGCAAGGATTACTTCAGAGGGCGCAAACGGAGATGGATTTACTATCAGTAAAGCAGCAGGTGAAATATCAGGTACTCATGATGAATTGATTAGCGGAGCAGAAGTGGCAGCTGCTGCAGAAGAGAAGGAAGCTCATTCATTTGAAATTGATCCTTCTCAGGTTGAAAACGTGAAGCAAAGGTGCTTGCCAAATGCACTAAATTATCCTATGCTGGAGGAGTATGACTTTAGAAATGATACGGTGAATCCAGACCTCGACATGGAACTAAAGCCTCAAGCACAACCACGTCCATATCAAGAGAAGAGCCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGTATTATAGTGCTACCTTGTGGTGCTGGAAAGTCCCTTGTTGGTGTTTCTGCAGCTTGCCGGATAAAAAAGAGCTGCCTTTGTTTGGCGACAAATGCTGTCTCCGTGGATCAGTGGGCTTTTCAGTTTAAACTATGGTCAACTATCCGAGAAGAACAAATCTGTCGTTTTACATCTGATAGCAAAGAGAGATTCCGTGGTAATGCTGGAGTTGTTGTGACAACCTATAATATGGTTGCTTTTGGTGGTAAACGGTCTGAAGAATCTGAAAAGATCATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTCCTCATGGATGAGGTGCATGTTGTTCCGGCCCATATGTTTCGTAAGGTCATTAGTATCACTAAATCTCACTGCAAACTTGGGCTCACAGCCACACTTGTTAGAGAGGACGAAAGGATTACAGATCTGAACTTCCTAATTGGCCCCAAGCTGTATGAAGCAAATTGGATAGATCTAGTAAAAGGTGGATTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACAAAAGAGTTTTTTGCTGAGTATTTGAAGAAAGAGAACTCCAAGAAGAGACAAGCACTTTATGTGATGAATCCAAATAAGTTCAGAGCATGTGAGTTTCTCATCAATTACCATGAAAGGGCACGTGGTGATAAAATTATAGTCTTTGCTGATAATCTTTTTGCTCTCACTGAGTATGCCATGAAACTCCGCAAACCAATGATATATGGTGCTACAAGCCATGTTGAGAGGACAAAAATTCTACAAGCATTCAAAACTAGCAAAGATGTAAACACTGTTTTTCTTTCCAAGGTGGGTGATAACTCAATTGATATTCCTGAAGCAAATGTGATAATTCAAATTTCTTCACATGCCGGTTCAAGGCGTCAAGAAGCCCAACGTCTAGGTCGTATTCTTAGGGCAAAGGGTAAACTTCAGGACAGGATGGCCGGGGGTAAAGAGGAGTATAATGCATTTTTTTATTCCCTTGTGTCAACTGATACACAGGAAATGTATTACTCAACTAAAAGGCAGCAATTTCTAATTGATCAGGGTTATAGCTTTAAGGTAATTACAAGCCTGCCTCCGTCCGACGAAGGACCTAGTTTGAGCTATCATCATCTTGAGGATCAATTGGCACTTCTTGGAAAGGTATTGAATGCCGGTGATGATGCAGTTGGATTAGAACAACTAGATGAAGATACAGATGAAATAGCCCTTAACAGTGCTCGTCGTTCTCAAGGATCCATGAGTGCAATGTCAGGTGCAAAAGGGATGGTTTACATGGAATACAGTACCGGGCGTCACAAAGGCCAAGGACAAATCAAGAGCAAGCCGAAAGATCCAGCAAAGAGACATCAATTGTTTAGAAAGCGGTTTGGTTCCACCTGA 2289 0.4172 MGHGDKNRPFKKLKSNTKFDDYRKGFVEDDDDDGYDDEDTKTKDFSKLELKPDHPNRPLWACGNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIVAVLNKLSKTKLPKDMIKFIHDSTANYGKVKLVLKKNRYFIESPFPEVLKTLLRDGTIAQARITSEGANGDGFTISKAAGEISGTHDELISGAEVAAAAEEKEAHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWIDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGPSLSYHHLEDQLALLGKVLNAGDDAVGLEQLDEDTDEIALNSARRSQGSMSAMSGAKGMVYMEYSTGRHKGQGQIKSKPKDPAKRHQLFRKRFGST 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g1407 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 285 447 IPR014001 -
Lal15g1407 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 705 IPR027417 -
Lal15g1407 762 SMART ultradead3 270 451 IPR014001 -
Lal15g1407 762 Pfam Helicase conserved C-terminal domain 59 182 IPR032830 -
Lal15g1407 762 MobiDBLite consensus disorder prediction 23 49 - -
Lal15g1407 762 PANTHER RAD25/XP-B DNA REPAIR HELICASE 42 759 - -
Lal15g1407 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 449 IPR027417 -
Lal15g1407 762 Pfam ERCC3/RAD25/XPB C-terminal helicase 455 703 IPR032438 -
Lal15g1407 762 SMART helicmild6 530 608 IPR001650 -
Lal15g1407 762 CDD DEXHc_XPB 266 435 - -
Lal15g1407 762 PRINTS Xeroderma pigmentosum group B protein signature 57 77 - -
Lal15g1407 762 PRINTS Xeroderma pigmentosum group B protein signature 143 162 - -
Lal15g1407 762 PRINTS Xeroderma pigmentosum group B protein signature 255 281 - -
Lal15g1407 762 PRINTS Xeroderma pigmentosum group B protein signature 286 308 - -
Lal15g1407 762 PRINTS Xeroderma pigmentosum group B protein signature 393 413 - -
Lal15g1407 762 PRINTS Xeroderma pigmentosum group B protein signature 459 481 - -
Lal15g1407 762 PRINTS Xeroderma pigmentosum group B protein signature 497 512 - -
Lal15g1407 762 PRINTS Xeroderma pigmentosum group B protein signature 517 539 - -
Lal15g1407 762 PRINTS Xeroderma pigmentosum group B protein signature 564 582 - -
Lal15g1407 762 PRINTS Xeroderma pigmentosum group B protein signature 583 608 - -
Lal15g1407 762 PRINTS Xeroderma pigmentosum group B protein signature 620 643 - -
Lal15g1407 762 PRINTS Xeroderma pigmentosum group B protein signature 711 730 - -
Lal15g1407 762 MobiDBLite consensus disorder prediction 734 762 - -
Lal15g1407 762 PANTHER DNA REPAIR HELICASE XPB1-LIKE 42 759 - -
Lal15g1407 762 Gene3D - 264 455 IPR027417 -
Lal15g1407 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 502 668 IPR001650 -
Lal15g1407 762 TIGRFAM rad25: DNA repair helicase rad25 44 757 IPR001161 GO:0003678|GO:0006289|GO:0006367
Lal15g1407 762 CDD SF2_C_XPB 466 630 - -
Lal15g1407 762 Gene3D - 456 696 IPR027417 -
Lal15g1407 762 Pfam Type III restriction enzyme, res subunit 273 429 IPR006935 GO:0003677|GO:0005524|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g1407 Lal-Chr15 16204673 16212849 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g1407 K10843 - gmx:100789550 1399.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g1407 15 16204673 16212849 Lal15g1407 15 16204673 16212849 ECH
Lal16g1203 16 8340212 8349496 Lal15g1407 15 16204673 16212849 LSH