Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1185 ATGAAGTGCCGATCCGTGGCGTGTATATTACCTGCTACCCCCTTTCCTCACCGTGTAACCGCCGTCGCCGCTTTCCCTCCCACCACCTTCTTCACCGCCGGATCCGATGGCTCCATCATCTGGTGGTCCCTCTCCCCGGAAGTTAAAGCTGTGGGCATGTTGTGTGGTCATGCAGCATCTATCACTGACCTTGCAATTTGTAGTCCAATTGCAGCAGAAGAGAATGATGATGACTCCAGTAATTTAGCGACAAATTCGATTTCGAGTAGTTTTAGTGCATTGATAAGTGCATGTTCTGATGGTTTCTTGTGTGTGTGGAGTAAAAGCAGTGGACATTGTCGGTGCCGGAGGAAATTGCCGCCCTGGGTTGGCACTCCGTGGATCATTCGAACCTTGCCTTCGAGGCCGAGATATGTGTGTATTTCTTGTTCTTTTATGGAAGGGAATGATGTTTTAGTGGATAGGGAAACTCATATAAAGAAGCCTTCTAAATGCATCATTATTATTGTAGACACATATTTGCTTTCAATTACACAAACTGTCTTTCATGGAATTCTGTCCATTGGTCCTGTGAAGTTTATGGCTGTAGTTTTAGATGATAATGATGAAAATGGGTTTTCTGTGTTTGTTGCTGATTCATCTGGTAAGCAACAGATGGTTTCAATGTCTGAGGACCATCGTGAACACAGAAAAAACTTGACAAGTTCACACAGAAATGCATCTCCGTTGGAGAGTTCTTCTTGCTTTGAGGGTTTGAGTGATTCAAATCATGTTGTTTCAATTTTAACGTATGGGAACATTATTGCTTTTATATTGGAAAACCGCTGTGTATTTAGGTTATCGTCTAGTGATACTTTAATTGGAGAGGTCTCATTGGTGGACGATCTGTTCTGTTCAGATGGGCATTCTACTCAAGCACATGTTTTGGGCGGCCTTTTTCTTGAAAGTGATGATATGGGGAATATATCTGATACCCATGAATGTAGTGACTCGATTCCAATATATCTTGTTGTGTGGAATAATAGAGGTTATGCAATTATCTATAAAATATCATATCAGAATGAAGCTATTCAATGTGAACCTCATTTTGAGATTCCTGCTACTCATTATCACTCTGAGATGAAATTGTCTATTTTCTTTCAACAAGTAAATCATTATCTTATCTGCATCAAGTCTGTTTGCTTTCATTATGAGGAACCTTTACTATGGAGACCGCATGTCACAATTTGGTCACTGCATCATTTTGATGATAAACCTGGTAAATTGTACCATCAATGCAGAATGATCAGTGATGTTGTATCTTTCACAAATTGGTTTGAGGAGTCTACTACTCAGCTCAAGGGACTGAATACTCCTGAGACTAAATCAACTTCTAGTGCAAGTCCAAGTTCAGAAGATATGGACAACACAGATGTAGACAGCATAAGTAATTATTATGCTTACAAGGGAAACATAGTTTCTTCTTCCATGGTTATCTCTGAGAACCTCTTTACTCCTTATGCTGTCGTGTATGGTTTTTTGAGTGGAGAAATAGAGGTTGTAAGATTTGATTTGTTTCAAGAAATTGGCTATGATGGTGCAAATTCGAACCCTGATGAAAAGTCAACCGTGTGCAAACAGTCCTTCTCAGGACACAAAGGTGCTGTACTTTGTTTGGCAGCACATCCTATGATAGGTAGTGCCGAAGGCTGGGATTTTAAAAGGGTTTTGGTGTCTGGAAGTATGGACTGCACAGTTCGTTTATGGGATCTTGACACTGGCTGCCTTATTATGGTGATGCATCATCATGTGTCTCCAGTGCGACAAATTATTCTTGCCCCATCTTTGGTTGGACATCCTTGGAGCGACTGCTTCCTTTCAGTTGGAGACGATGCATGTGTTGCTCTTGTTTCTCTTGAGACTTTGCGGGTGGAGAGAATGTTTCCTGGGCACTCGAACTATTCTTCAAAAGTTGTATGGGATGGAGAAAGAGCTTATATTGCCTGTCTTTGCCAAACACTTCATGGAACATCTGATGCCGCTGACGTGTTATATATTTGGGATTTAAAGACAGGTGCCCGCGAGCGAGTCCTACATGGGACAGCTGCACATTCAATGTTTGATCATTTTTGCAAAAGCATCCGCATGAATTCTATTTCTGGCACATTGCTGAATGGAAATACTTCAGTCTCTTCATTACTTCTTCCAATGGTTGATGAAGCAAGGTTATCTAACTCCGGTCACAGCCTGTCAGCAAAGCAAAATCCATCCTCTTTGTTTGGTCTTTGGAGTAACAAGCTACCTATCAAGTGCTCTTGCCCACTCCCTGGGATCGTCGCACTGAGTTTTGATCTTGCATCATTGTTGTTCACTTATCAAAAGAATGAGTCCTTCGAAAATGGTGGAAGCAAGCCAGTGAATATCAATTTGAAGCAGCAGGGAGTTCAAGAGCAAAATCCCAACTACCAAAATCCAGAAACTTTAGAGAGGCATGAGTTGCTTGGCCTATTTGAAGAATATTTGCTTCGATTTAGCTTGTCATTTTTACATCTGTGGAATTTCGACAACGAGCTCGATAATTTGCTGATAAATGACATGAAGCTTAGGAGACCAGAAAATTTTGTGCTAGCTTCAGGTCTGCAGGGGGATAAAGGATCATTGACATTGACATTTCCTTGCCGGGGTGCTACTCTTGAGCTCTGGAAATCATCATCTGAATTTTGTGCAATGACGTCATTGATGATGGTATCCCTTGCCCAACGTCTAGTTAGCTTGACTAACTCTGGTTCAGCAGCCGGCAGTGCTTTAACTGCATTCTATACCTGGAGTTTCATGGAAAAATTTCCTGATATGAAGCCTCCTTCATTACAGCTTTTGGTGTCTTTTTGGCAAGATGAAAGTGAACATGTACGTATGGCAGCACGCTCTATATTTCATTGCGCTGCCTCTCATGCTATTCCACTTCCACTATGCAATTCAAAATCTACTGAGCCAGCTAATATAAGTTCCCTAACTGGAAATAGAGGCAATCAACTGGGAAATACCATAGTAGAAAGCATATTTCTTCAGGCAAAAAATCAAGGATCTTTCCAAGATGAGGAATCCAAGATACTTGCTTGGCTAGAATTATTTGAATTGCCAGATTGGATTTCTTGTGTTGGGGGAACAAGTCAAGATGCAATGACATCTCACATTATTGTTGCTGCTGCATTGGCTATATGGTACCCTACTCTTGTAAAGTGGAGTCTTGCCAAGTTGGTTGTTCATCCATTGGTGAAGTTGGCTATGGCCATGAGTGAGAAATACAGTTCTACTGCTGCCGAGCTCCTTGCAGAGGGCATGGAGAGTACATGGAAAGGACTCGTTGTCTCTGAAATGCCTTCTTTGATTGAGGATATTTTTTTCCAAATTGAGTTGAGCAGACCATCTAATTCAATGAAAGAAGTTCCAGCTGCATCCTTTTCTATTCAAAAGACTTTGGTTGAGGTTCTTCTTCCAAGTTTAGCTATGGCTGATATACCAGGATTTTTGTCTGTGATAGAAAGCCAAATTTGGTCCACTGCATCCGATTCACCTGTCCACTTGGTGTCTCTCTTGACTCTTATAAGGATTATGCGTGGTTCTCCGAGAAATTTGGCTCAATATCTTTACAAGGTGGTCAACTTCATTTTACAGACTATAGATCCTAGCAACTCAATCATGCGGAAAACATGCTACCAGACTTCAATGACAACTTTGAAGGAGGTCGTACGTGTATATCCTATGGTTGCTGTTAATGATTCATGGACCAGACTGGCAGTAGGGGATGTGATTGGAGAAATTAACAATGCAAGCATTAGGGTTTATGATATGCAAAGTGTGACAATGGTTAAAGTTTTGGATGTTAGTGGGCCTCCTGGACTTCCCAGTTTGCTCACAGCAACATCAGGAACAATGTTAACTATTGCAGTTTCAGCTTTGAGTTTTTCGCCAGATGGAGAGGGGCTGATTGCCTTTTCTGAACATGGGCTAATGATTAGATGGTGGTCACTGGAATCTGTTTGGTGGGAGAAACTGAGCCGGAACTTTGTACCTGTCCAATGCACCAAACTAATCTTTGTTCCTCCTTCGGAGGGATTTTCAACTAATTCATCCAGGTCAAGCATAATGGCCAACATCTTGGAAAATGACAGGCAGTTGAACATTCAGGACGATGTGAAGGATCATGAGGACAGTTTGAAGCAATTACTTCATATTCTGGACCTATCTTATCGACTGGAATGGATCGGTGAGCGGAATGTACTTCTTTCCCGGCACGGCTATGATTTGGGCACTTTTCAGCTATAA 4305 0.416 MKCRSVACILPATPFPHRVTAVAAFPPTTFFTAGSDGSIIWWSLSPEVKAVGMLCGHAASITDLAICSPIAAEENDDDSSNLATNSISSSFSALISACSDGFLCVWSKSSGHCRCRRKLPPWVGTPWIIRTLPSRPRYVCISCSFMEGNDVLVDRETHIKKPSKCIIIIVDTYLLSITQTVFHGILSIGPVKFMAVVLDDNDENGFSVFVADSSGKQQMVSMSEDHREHRKNLTSSHRNASPLESSSCFEGLSDSNHVVSILTYGNIIAFILENRCVFRLSSSDTLIGEVSLVDDLFCSDGHSTQAHVLGGLFLESDDMGNISDTHECSDSIPIYLVVWNNRGYAIIYKISYQNEAIQCEPHFEIPATHYHSEMKLSIFFQQVNHYLICIKSVCFHYEEPLLWRPHVTIWSLHHFDDKPGKLYHQCRMISDVVSFTNWFEESTTQLKGLNTPETKSTSSASPSSEDMDNTDVDSISNYYAYKGNIVSSSMVISENLFTPYAVVYGFLSGEIEVVRFDLFQEIGYDGANSNPDEKSTVCKQSFSGHKGAVLCLAAHPMIGSAEGWDFKRVLVSGSMDCTVRLWDLDTGCLIMVMHHHVSPVRQIILAPSLVGHPWSDCFLSVGDDACVALVSLETLRVERMFPGHSNYSSKVVWDGERAYIACLCQTLHGTSDAADVLYIWDLKTGARERVLHGTAAHSMFDHFCKSIRMNSISGTLLNGNTSVSSLLLPMVDEARLSNSGHSLSAKQNPSSLFGLWSNKLPIKCSCPLPGIVALSFDLASLLFTYQKNESFENGGSKPVNINLKQQGVQEQNPNYQNPETLERHELLGLFEEYLLRFSLSFLHLWNFDNELDNLLINDMKLRRPENFVLASGLQGDKGSLTLTFPCRGATLELWKSSSEFCAMTSLMMVSLAQRLVSLTNSGSAAGSALTAFYTWSFMEKFPDMKPPSLQLLVSFWQDESEHVRMAARSIFHCAASHAIPLPLCNSKSTEPANISSLTGNRGNQLGNTIVESIFLQAKNQGSFQDEESKILAWLELFELPDWISCVGGTSQDAMTSHIIVAAALAIWYPTLVKWSLAKLVVHPLVKLAMAMSEKYSSTAAELLAEGMESTWKGLVVSEMPSLIEDIFFQIELSRPSNSMKEVPAASFSIQKTLVEVLLPSLAMADIPGFLSVIESQIWSTASDSPVHLVSLLTLIRIMRGSPRNLAQYLYKVVNFILQTIDPSNSIMRKTCYQTSMTTLKEVVRVYPMVAVNDSWTRLAVGDVIGEINNASIRVYDMQSVTMVKVLDVSGPPGLPSLLTATSGTMLTIAVSALSFSPDGEGLIAFSEHGLMIRWWSLESVWWEKLSRNFVPVQCTKLIFVPPSEGFSTNSSRSSIMANILENDRQLNIQDDVKDHEDSLKQLLHILDLSYRLEWIGERNVLLSRHGYDLGTFQL 1434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1185 1434 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1434 - -
Lal16g1185 1434 SUPERFAMILY WD40 repeat-like 1249 1340 IPR036322 GO:0005515
Lal16g1185 1434 ProSitePatterns Trp-Asp (WD) repeats signature. 570 584 IPR019775 -
Lal16g1185 1434 Pfam WD domain, G-beta repeat 538 583 IPR001680 GO:0005515
Lal16g1185 1434 Gene3D - 495 762 IPR015943 GO:0005515
Lal16g1185 1434 SUPERFAMILY WD40 repeat-like 16 695 IPR036322 GO:0005515
Lal16g1185 1434 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 542 587 - -
Lal16g1185 1434 MobiDBLite consensus disorder prediction 448 469 - -
Lal16g1185 1434 SUPERFAMILY ARM repeat 936 1268 IPR016024 -
Lal16g1185 1434 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 592 IPR001680 GO:0005515
Lal16g1185 1434 SUPERFAMILY WD40 repeat-like 28 351 IPR036322 GO:0005515
Lal16g1185 1434 SMART WD40_4 634 681 IPR001680 GO:0005515
Lal16g1185 1434 SMART WD40_4 535 583 IPR001680 GO:0005515
Lal16g1185 1434 SMART WD40_4 5 43 IPR001680 GO:0005515
Lal16g1185 1434 SMART WD40_4 586 631 IPR001680 GO:0005515
Lal16g1185 1434 SMART WD40_4 47 107 IPR001680 GO:0005515
Lal16g1185 1434 SMART WD40_4 1291 1336 IPR001680 GO:0005515
Lal16g1185 1434 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1434 - -
Lal16g1185 1434 Gene3D - 6 273 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1185 Lal-Chr16 8142569 8152302 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1185 K24738 - gmx:100818675 2130.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1185 16 8142569 8152302 Lal16g1185 16 8142569 8152302 ECH
Lal16g1185 16 8142569 8152302 Lal15g1416 15 16308091 16318247 LSH