Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1166 ATGGATGAAGAATTGAATGATGAAGCAACAAGATTGGAGGTTGTTGATGGTGTGCAAAATGATGACTTTTCACTAAACCCTGAATGCCCCAAAATATTAAAGCACTATGAAATCCATGATGGACAAGGAAATAATGTAGTTGAAGCCACCAGCGATGTAACTACGTCGCAACATTTTCGTCCGAGTCTTTTTTCGGATGATGGTGGAGCCATGGTTGAAGAGTTGACAGTGAAGAGTTACAACGGTTTGGCCTTAGATATTGGTACATCGAACAGTCGAGAGGGTGTTTATAATAAGCAGAATCAGCGTCTGCATCTTAATCAGATAGGTAGTGATTCAGGAACGGGAAATACACGAAGTGATACTGGGTACATAAATAGTGTTCTAGCTACATCTAGTAGTGTTTGGGAGGATTTTGAGTCCACAACTTTTGAAGAGATATTGGCTAGAAAATCAGTCTGTGATAATCAGAGCAATGCTGTAGAACACTTGAATGCTGTTGATAAAAAACCTGAGCATAAAGAGGGCCCGGGTGAAGCTCATAGAGGAATACGAACGAAAATTATGTCCAAATCAGGATTTGCTGAGTATTTTATCAAAAACACATTGAAGGGAAAGGGTATTGTATGTAAAGGTCCATCTTCGAATGATTCATTTGTGTCTAGGGATCATAATCCAATTAAGGCCACTCGGATGGACAATAGTGTATCACTTAGTTCTGGTCTGAAGACTGCAAATTCTCCTCATAATGCTACAATGCCTAGATCTGATGGGTCTGACTTTGGTGGTGTGACTTTGAGAGAATGGTTGAAAGCTGGGCACTGCAAAGGAAGCAAAGCAGAGCGCTTAAGTATATTTAGAAAGGTTGTGGATTTGGTTGATGAATCTCACTCTCAGGGAGTTGCACTGCACCACCTGTGTCCGTCTTATATTAAATTGTTACCGTCGAACCAGGTTATGTACCTTGGATTACCTATACAGAAACAGATGTCAGATAGTGTTGCAAATTCTGAAGTTTTTCAGTTACAGAGTTCTTTTATTAGAAAAAGGCTGTCAGAGCAGGCGATGCCTCTCTCTCTAGATATGCAATCGAAGAAAAAGAAAGTTGATAACAATGTGAGAGTTTCTGGTGATAGTAAAGTAAGTGCAGTTGTGTCAGAAGATTATTGCAATGAATATAAGGAAGATATCCGGTTTACTAAACATAATATTCGGGGAGTGTCTAGTATCCCTCGCATGTCTAATGCAGGGAAGTTGCAGTTGACTTCCATAAATGAAGGATTGGAAAGTAAGTGGTATACAAGTCTTGAGGGAGGTTGCACAACATCATCAAATATCTACTGTTTGGGTGTCCTCTTTTTTGAGGGGAGCAAGGCATGGATTAGAGAGTTTGCCAACAATGATATTTTTGGAGCTTTGCTTGGCCATTTTGACTCTGAAAGAGCACATATTGCAGCTATGTCTGATATCCGTAATAGGATTCTTCCTCCAGGTCTCTTATCACAAAATCCTAAGGAAGCTGGATTTTGTCTTTGGATGCTGCACCCTGAACCGTCATCACGTCCAACAACAAGGTTTACTCCACTATTTTCTGTTATTGTATGTAGTCTCATGTATCTTCTGTCGCTAGAGATCCTACAATCAGAAGTGATTAATGGAATGCAGGAGGTGTATAGTGAGGAATTATCATTAAGTATTGACCAAGATGACACAGAATCAGAGTTGTTATTGCATTTCCTCGTCTCATTAGAAGAGCAGAAGCAAATGGATGTCGGCGAATTGGAAGAAGAAATTAGATGGTTGGAATCAGATATAGAAGAAGTGGAGAGGAGACATAGCTCAAGAATATCCTTGGCTCCCTCTAGCTTACAGAATGACTCCTCTTGTCAAATAGAGAGTGCATCTCTCAACAAAGAACCTTCGAGGTCAGCAACATTACCTCCAGTATCTCCAATCTCTAATGCATATGAACTGAAATTGAGGAGAAATATAAGCGAGGTTGAAAGTGCTTATTTTTCTATGAGATCCAAAATTGAGCTTCCTGAAATAGTTGCTGCAAATCACCCAGATAAAGATATACTGAGAAATCGTGAGAACTGGTGTGTTGCCCAAAAAGACAAAAAACAACATCAAAGGACAGATGCTTTAGGAGCCTTCTTTGATGGTTTATGCAAGTATGCATGTTATAGCAAGTTTGTAGCACGGGGCGTACTTAGAAATGCAGATTTTAACAGTCCTGCTAATGTAATCTGCTCTCTGAGCTTTGATAGAGATGAAGACTACTTTGCTGCTGCTGGAATATCAAAGAAAATAAAAGTTTTTGAGTTTAATGCACTTCTTAATGACTCAGTTGATATTCATTATCCTGTAGTTGAGATGTCAAACAGATCAAAGCTCAGTTGTGTTTGCTGGAATAACTACATCAAGAACTATCTTGCCTCCACAGACTATGATGGCATAGTTAAGGCAGTAATTGGTGATAGTGATGGTGGAGGCGACAATGGTGGTGGTGATGCTGGTGGTGTCAGTTGTAGTGGTGAGCTATGGGATGCTAGCAGAGGTCAAGAGTTTTCTCAATTTAGTCAACATGAAAAGAGGGCTTGGTCTGTTGATTTCTCTCCAGTATGCCCTACAAAATTTGCTAGTGGTAGTGATGATTGTTCTGTGAAGCTGTGGAGCATCAGTGAGAGAAACTGTTTAGGCACAATCAGGAATGCTGCCAACGTCTGCTGTGTTCAATTCTCTGCTCATTCTTCTCATTTGCTGGCCTTTGGATCTGCTGATTATTCAACTTATTGTTATGATCTTCGCAATCTTAGAAGCCCCTGGTGTGTGTTGGCTGGCCATCGTAAAGCTGTGAGCTATGTCAAATTCTTAGACTCTCAAACAATTGTTTCTGCATCAACCGATAATTCATTAAAGATCTGGGATCTTAATAAAACCTCTCCCGTGGGTCCATCTACCAGTGCTTGCAGCTTAACCCTGTCAGGACATACTAATGAGAAGAATTTTGTGGGTTTATCAGTTGCTGATGGATATATTGCATGTGGTTCAGAAACAAATGAGGTTTATGCCTATTATAAGTCTCTTCCCATACCAGTTACTTCATGCAAGTTTGGGTCCACTGATCCTATTTCTGGTAAAGAGAGTGATGATGACAATGGTCAATTTGTTTCAAGTGTGTGCTGGAGAGGGAAATCAAACATGGTTATTGCTGCAAATTCAAGTGGATGTATGAAAGTGTTCCAAATGGTTTGA 3258 0.4006 MDEELNDEATRLEVVDGVQNDDFSLNPECPKILKHYEIHDGQGNNVVEATSDVTTSQHFRPSLFSDDGGAMVEELTVKSYNGLALDIGTSNSREGVYNKQNQRLHLNQIGSDSGTGNTRSDTGYINSVLATSSSVWEDFESTTFEEILARKSVCDNQSNAVEHLNAVDKKPEHKEGPGEAHRGIRTKIMSKSGFAEYFIKNTLKGKGIVCKGPSSNDSFVSRDHNPIKATRMDNSVSLSSGLKTANSPHNATMPRSDGSDFGGVTLREWLKAGHCKGSKAERLSIFRKVVDLVDESHSQGVALHHLCPSYIKLLPSNQVMYLGLPIQKQMSDSVANSEVFQLQSSFIRKRLSEQAMPLSLDMQSKKKKVDNNVRVSGDSKVSAVVSEDYCNEYKEDIRFTKHNIRGVSSIPRMSNAGKLQLTSINEGLESKWYTSLEGGCTTSSNIYCLGVLFFEGSKAWIREFANNDIFGALLGHFDSERAHIAAMSDIRNRILPPGLLSQNPKEAGFCLWMLHPEPSSRPTTRFTPLFSVIVCSLMYLLSLEILQSEVINGMQEVYSEELSLSIDQDDTESELLLHFLVSLEEQKQMDVGELEEEIRWLESDIEEVERRHSSRISLAPSSLQNDSSCQIESASLNKEPSRSATLPPVSPISNAYELKLRRNISEVESAYFSMRSKIELPEIVAANHPDKDILRNRENWCVAQKDKKQHQRTDALGAFFDGLCKYACYSKFVARGVLRNADFNSPANVICSLSFDRDEDYFAAAGISKKIKVFEFNALLNDSVDIHYPVVEMSNRSKLSCVCWNNYIKNYLASTDYDGIVKAVIGDSDGGGDNGGGDAGGVSCSGELWDASRGQEFSQFSQHEKRAWSVDFSPVCPTKFASGSDDCSVKLWSISERNCLGTIRNAANVCCVQFSAHSSHLLAFGSADYSTYCYDLRNLRSPWCVLAGHRKAVSYVKFLDSQTIVSASTDNSLKIWDLNKTSPVGPSTSACSLTLSGHTNEKNFVGLSVADGYIACGSETNEVYAYYKSLPIPVTSCKFGSTDPISGKESDDDNGQFVSSVCWRGKSNMVIAANSSGCMKVFQMV 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1166 1085 MobiDBLite consensus disorder prediction 234 258 - -
Lal16g1166 1085 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 860 895 - -
Lal16g1166 1085 SMART WD40_4 939 977 IPR001680 GO:0005515
Lal16g1166 1085 SMART WD40_4 988 1027 IPR001680 GO:0005515
Lal16g1166 1085 SMART WD40_4 853 893 IPR001680 GO:0005515
Lal16g1166 1085 SMART WD40_4 896 935 IPR001680 GO:0005515
Lal16g1166 1085 SMART WD40_4 736 775 IPR001680 GO:0005515
Lal16g1166 1085 SMART WD40_4 786 825 IPR001680 GO:0005515
Lal16g1166 1085 SMART WD40_4 1030 1083 IPR001680 GO:0005515
Lal16g1166 1085 PANTHER PROTEIN SPA1-RELATED 2 38 822 IPR044630 GO:0009640
Lal16g1166 1085 PANTHER PROTEIN SPA1-RELATED 2 847 1085 IPR044630 GO:0009640
Lal16g1166 1085 PANTHER PROTEIN SPA1-RELATED 2 38 822 - -
Lal16g1166 1085 PANTHER PROTEIN SPA1-RELATED 2 847 1085 - -
Lal16g1166 1085 SUPERFAMILY WD40 repeat-like 744 1083 IPR036322 GO:0005515
Lal16g1166 1085 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 946 979 - -
Lal16g1166 1085 Pfam WD domain, G-beta repeat 855 893 IPR001680 GO:0005515
Lal16g1166 1085 Pfam WD domain, G-beta repeat 945 977 IPR001680 GO:0005515
Lal16g1166 1085 ProSiteProfiles Trp-Asp (WD) repeats profile. 946 986 IPR001680 GO:0005515
Lal16g1166 1085 MobiDBLite consensus disorder prediction 234 254 - -
Lal16g1166 1085 Gene3D - 720 1085 IPR015943 GO:0005515
Lal16g1166 1085 ProSitePatterns Trp-Asp (WD) repeats signature. 964 978 IPR019775 -
Lal16g1166 1085 Coils Coil 591 611 - -
Lal16g1166 1085 Gene3D Transferase(Phosphotransferase) domain 1 264 532 - -
Lal16g1166 1085 ProSiteProfiles Trp-Asp (WD) repeats profile. 860 902 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1166 Lal-Chr16 7969117 7980002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1166 839 978 Miscellaneous Gene Families AT5G08390 25.532 3.34e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1166 K16240 - gmx:100776980 1379.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1166 16 7969117 7980002 Lal16g1166 16 7969117 7980002 ECH
Lal16g1166 16 7969117 7980002 Lal15g1441 15 16593473 16607976 LSH