Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1021 ATGAACGCTTATGCTTTTTCTTCAATGAACTTCCCCAGATTCCAACGTTATTTACGTTTCTCAAAGCCCCTCACTCTAATCTCTCCTTCATCCTCATCTCTTATATCTCTTCTCTCCATTCAATTTTCTTCACCCATCACCACTGATACCACCTCCAACCACAATAACGCTCCTTGGCTTATCGTCGGCCTCGGTAATCCTGGCAAGAATTTTAATGCTACCCGCCACAATGTGGGTTTTGAGATGGTTGATGCAATAGCAGAAGCTGAAGGAATATCTATGAGCAGTGTTTCCTTCAAAGCCCTGTTTGGAAAAGGTTATATAGGTGATGTGCCGGTTATACTTGCTAAACCACAGACTTTCATGAATTTAAGTGGTGAATCTGTTGGGGCCATAGTTTCATATTACAAGATTCCATTGAAGCAAGTACTTGTGATCTTTGATGACTTGGATTTGCCCTTTGCTAAATTGCGGCTTCTACCAAAGGGCGGACACGGAGGTCACAATGGAATGAAGAGTGTCATTAATCACTTGAAAGGGAATAATGGTTTTCCGCGATTAAGAATGGGCATCGGACGGCCTCCAGGGAAAATGGATCCTGTAGCCTTTGTTCTTCGCTCTTTCACGAAACAGGAGAGGGGGGAGTTGAATTTTACATTACAACATGGATTAGAAGCCGTACGGATTCTTTTGCTGGAAGGATTTAATAAAAGTGCAACATTTGTTAATAGTGCCAAGAAGATATAG 747 0.4203 MNAYAFSSMNFPRFQRYLRFSKPLTLISPSSSSLISLLSIQFSSPITTDTTSNHNNAPWLIVGLGNPGKNFNATRHNVGFEMVDAIAEAEGISMSSVSFKALFGKGYIGDVPVILAKPQTFMNLSGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRLLPKGGHGGHNGMKSVINHLKGNNGFPRLRMGIGRPPGKMDPVAFVLRSFTKQERGELNFTLQHGLEAVRILLLEGFNKSATFVNSAKKI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1021 248 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 71 84 IPR018171 GO:0004045
Lal16g1021 248 Hamap Peptidyl-tRNA hydrolase [pth]. 58 236 IPR001328 GO:0004045
Lal16g1021 248 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 164 174 IPR018171 GO:0004045
Lal16g1021 248 Gene3D - 44 246 IPR036416 GO:0004045
Lal16g1021 248 PANTHER PEPTIDYL-TRNA HYDROLASE 25 245 IPR001328 GO:0004045
Lal16g1021 248 SUPERFAMILY Peptidyl-tRNA hydrolase-like 58 243 IPR036416 GO:0004045
Lal16g1021 248 Pfam Peptidyl-tRNA hydrolase 60 238 IPR001328 GO:0004045
Lal16g1021 248 TIGRFAM pth: aminoacyl-tRNA hydrolase 60 240 IPR001328 GO:0004045
Lal16g1021 248 PANTHER PEPTIDYL-TRNA HYDROLASE CHLOROPLASTIC 25 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1021 Lal-Chr16 6803956 6812442 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1021 K01056 - gmx:100526866 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1021 16 6803956 6812442 Lal16g1021 16 6803956 6812442 ECH
Lal16g1021 16 6803956 6812442 Lal15g0997 15 8015953 8019747 LSH