Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0997 ATGAACCTTTGTGCTTGTTCTTCCTTATTATCAACGAACTTCCCCAGATTCCGCAATTGCTCACGTTTCTCAAAACCTTTAAGCCTAATCTCACTTTCTTCATCTTCTTCAGTTATTACTTCTCTTTACTCCAATCAAAATTCTTCAGCAATGGCCGCAGAAGCAGCAGCTTCAATCACCACAGAGGCCACGAAGAAGAAGAAGAACGAACCTTGGCTCATTGTTGGACTCGGTAATCCTGGCAAGAAGTACTCTGGAACCCGCCATAATGTGGGTTTTGAGATGGTTGATGCTATTGCAGAAGCTGAAGGAATATCTATGAGCACCGTTTCCTTCAAAGCTATATTTGGAAAAGGTTTTATAGGTGAGTTACCGGTTATACTTGCAAAACCACAGACTTTTATGAATTCAAGTGGTGAATCTTTTAATGCTGATTGGCTAGTGTTCAAATCTATTTTGAAGGTCGGAGCCATAGTTTCATATTACAAGATCCCATTGAAGCAAGTACTTGTGATCTTCGATGACTTGGATTTGCCTTTTGCTAAATTGCGGCTGCTACCAAAGGGTGGACACGGCGGTCACAACGGAATGAAGAGTGTTATTAATCACTTGAAAGGGAACAATGGCTTTCCGCGATTACGAATCGGCATTGGACGACCTCCCGGAAAAATGGATCCTGTAGCGTTTGTTCTTCGTCCTTTCACTAAACAGGAAAGAGAAGAGTTGGATTTTACATTACAACATGGATTGGAAGCAGTAAGGATTCTTTTGCTAGAAGGGTTTGATAAAAGTGCAACATTTGTTAATAGTGCCAAAAAGATAGAGCAAATTGGTTAA 837 0.4074 MNLCACSSLLSTNFPRFRNCSRFSKPLSLISLSSSSSVITSLYSNQNSSAMAAEAAASITTEATKKKKNEPWLIVGLGNPGKKYSGTRHNVGFEMVDAIAEAEGISMSTVSFKAIFGKGFIGELPVILAKPQTFMNSSGESFNADWLVFKSILKVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRLLPKGGHGGHNGMKSVINHLKGNNGFPRLRIGIGRPPGKMDPVAFVLRPFTKQEREELDFTLQHGLEAVRILLLEGFDKSATFVNSAKKIEQIG 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0997 278 SUPERFAMILY Peptidyl-tRNA hydrolase-like 71 269 IPR036416 GO:0004045
Lal15g0997 278 Hamap Peptidyl-tRNA hydrolase [pth]. 71 262 IPR001328 GO:0004045
Lal15g0997 278 PANTHER PEPTIDYL-TRNA HYDROLASE 29 272 IPR001328 GO:0004045
Lal15g0997 278 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 190 200 IPR018171 GO:0004045
Lal15g0997 278 TIGRFAM pth: aminoacyl-tRNA hydrolase 73 265 IPR001328 GO:0004045
Lal15g0997 278 Gene3D - 56 272 IPR036416 GO:0004045
Lal15g0997 278 Pfam Peptidyl-tRNA hydrolase 73 264 IPR001328 GO:0004045
Lal15g0997 278 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 84 97 IPR018171 GO:0004045
Lal15g0997 278 PANTHER PEPTIDYL-TRNA HYDROLASE CHLOROPLASTIC 29 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0997 Lal-Chr15 8015953 8019747 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0997 K01056 - gmx:100526866 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0997 15 8015953 8019747 Lal15g0997 15 8015953 8019747 ECH
Lal16g1021 16 6803956 6812442 Lal15g0997 15 8015953 8019747 LSH