Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0930 ATGGCGATCGTAACCGGAGATCGCTACCTCGACAAACTCGTCGACTTCGTTGAGGAACAAGCGGGTCCACTCATCGAAGGAGCCTTGGTTCTCAAACTTAACCCTGCGGGGCTTCACTACGTTCAATCTAGGCTTGAAGCGCTGTACGAGCTTGAGAGCCTCCTCGCCGGAGCACCGGTTGATTACCTTCGAGCCTATGTTTCTGACCTCGGTGACCACCGCGCTCTTGAGCAGCTCCGGAGGATTCTACGCCTTCTTACGTCGCTTAAGGTGGTTTCGGTGTTGCCGACGCCGATCAGGGATCCCACTCCGTTGTCGTTTTTACCGTTTGCGACGTTGAAGGTTCTGGAACTTAGAGGATGTGATTTGTCGACTTCTGCAGCGAGAGGGTTGCTTGACCTTAGGCACACTCTTGAGAAGATTGTTTGTCATAATTCTACTGATGCTCTGCGGCATGTGTTTGCAAGCAGGATAACAGAGATAAAGGATTCTCCACAATGGAACCGGTTGTCATTTGTCTCTTGTGCTTGTAATGGTTTAGTTCTCATGGATGAGTCTTTGCAGCTTCTTCCTACTGTTGAAACACTTGACCTTAGCAGGAACAAGTTTGCAAGGGTGGATAATCTGAATAAGTGTATGAAATTGAAGCATTTGGACCTTGGTTTCAATCACATCAGAACACTTGCACCCTTCAGCCAGGTTTCATGTCATATTGTTAAACTAGTTTTGAGGAACAACGCTCTATCTACTTTGCGTGGGATTGAGAATTTGATGTCTCTAGAAGAACTTGATGTTTCCTACAATATTATTTCCAATTTTTCAGAGCTAGAGTTCCTTGCAAGCCTTATAGATCTTCGAAGTTTATGGTTGGAAGGAAATCCTTTGTGTTGTGCTCGATGGTATAGAGCACAAGTGTTCAGCTTCTTTTCCTACCCCGAAAAGGCAAGTTCATATTGTCTGCATCTCCTATCTGTTCTTTATTGTGCTAATCAGTTGAAGTTAGACGAGAAGGAAATCAACACTATAGATTTTTGGAAGAGACAAATAATTATTGCCACTATGCAAAAGCAACCGGCCAGTTTTGGGATTTATGTGCCTGCGAAAGATGAGGCTATAGTGGAAGGGAGCAATAATAGAAGGATATGTCGTCTTGCCTGTATTGAGAGTGAAGAAGAGATCACTAGCATATGTTCTGATGAGGAGTCTGTGTCATGTGCAAATGAAATTCAAAACAGAGAGGAGGAAGCTTTATCTGATGAGGAAGCTGAAATAGAGGATTTGATAAACAAAGTTGAACATATGAAGAAAGAGCGTTCTATTCTGTGGTTGCAGGGATTTAAAGACTGGATGGATATCACTTCTGATAAATCAATGGAAACTTACAAAGAAGACAGAGCCGCCTTATTGCATCATCTGAAAGAAAATTACATCAGAAACAAGACAAATCAGGAGCAACATGGTGAAGTCTCAAGATATGCTTCAGATTCTGTTATAGCCTCAGGAGATGACAGTAGCATGAATATTTTAGAATCAGATAGTTCTTTTGTAGATATGTCTGCTAGTTTTCATAGACAACAGTACTTTGACTTTAGAGCTTTGCTTGGTAATGCTGGTGGGGCCTCTCATTCTGACTCTGGAGGAGCAGAGCGCCTTAAAGGTCTGTCACTTGAGAGAATTAGCAGTTCACTCTCACAATCTATAAGTTTTCATTCTGACACCAATACCATCCATGGATCACATAAAATAGCTGAAAATATCGATACATCACCATTGACCACAATTCGTGATAAATCTGGGTCTCAGGCATCATCTGCATGCCACACATCTCCTCCTCATTTTGAAGAAGACCTTCTCCATCGGCGGCAACACTTAGTAGAGGAAATTTTGCAGCTGTCTGTGAATTCCTTTTCAATGGCATCTTCTGATAGTAACACCAGCTGTAGTGAAGTTGATTACACTGAATTTGAGCCACCAGTGCCTGAAGGTGATAATATCCCCTGCAAAAATTATGTAAATGGTAGTGTTGATGGTTATATTTCTCAAAATCAATTCAAGGACAAGTTTAATAACCCAAGCCAAAGAATTCCTCATGCAATAGAAAATGGCATTAGTTTATTTAGTTCAACCAGTGACCAAACTTCTCAGCATGGTTCATTTGATTTTGTTGCTGGTGCTGACAATGGTAAGAGAGCATTTTTTGTTAGCCAAGATGCTGACTTGTCGGAGAAAATAAAAACAAAAAGAAAAGCCAAGAAGAGAGTTATTTCAATCTTAGAAGAGAATTTAGACTGCAATGCATGTGATTATCAACAAGAGAAGATTAGTCAAGGAGAGATTTATGCAAATTCCAAGAGAGAATTGGACGTTGATGAATTTTCTGGGGGGAATTGCTCTACTCCAGAGAATGATGATTTTATCGTGACTTATTTTAATATGCATATTGCTGATTCTGAAGCCAGTGAAATCTGTAGTCATTGCATACGCTGTGATTGTGTCCTCCAGATGGAAGCAATGTACAGCGAAAGAGAAGTTGCAATATTGTTGAGCAGCCATAAGAAGCTCTATGTGCTACTAATCAGTGTTGTTTCTGATGGGTCAGGATCTGGTTTGAATTTATTGAATTGCCACAAGTTGGATGAAGTTTGTGAGGTGCTTGTTGGAATGGGACTTCTGGTGTTAAGGGTGAAGTTTGAAAGCGGTGAAACATACCTTTTTGTAACTAAAAGTATTGAGAAATCGAGAGAGATACTATGTAGAATACACATGCTCGATTCATGTGGTGGAAATGGTAGATGCTCAATAAGAAGTTTGGAGCAGGTCCAGGTTGAGCTGTTTGACAACCAAATATGTGGTGGTTCAAATGTGAGCATATATCAGTATGCGATGGTGCTTGTCTGTTATAACAATGGCAGTGATCAGTCATGGTTATCGAGATCGCTGTTTGTGATTGACGGGTATGTGCTTTTTTGCATTGAAGATGTTAAGCAGATGTACTCATTTTCGACAGATGCGTCCTTTTCGCCATATTTCAAAGTTGATTCATTTTGCTCCATTACTGACATTACTGAGTTGGTGATTGAGGTTGGTGACAACAGCTGGTGTGTGACTTTAGCCATGAAAAGTCTAATGGCTGAATTCGTCCCCTCAACCATAACAAACCTTGAAGCTGTCAATCATGGAAACACGGCTCCAGGTTCTATAAAATTGAAACTTCATTGGTATTCCAAAGATAACCTTTTGAAGTTTGTGTCACTGATGAAGGCAATCCATGCAGAAAAAGCTGTATCCCCTTTAGTAGTAAGATGTATATCGTAG 3315 0.409 MAIVTGDRYLDKLVDFVEEQAGPLIEGALVLKLNPAGLHYVQSRLEALYELESLLAGAPVDYLRAYVSDLGDHRALEQLRRILRLLTSLKVVSVLPTPIRDPTPLSFLPFATLKVLELRGCDLSTSAARGLLDLRHTLEKIVCHNSTDALRHVFASRITEIKDSPQWNRLSFVSCACNGLVLMDESLQLLPTVETLDLSRNKFARVDNLNKCMKLKHLDLGFNHIRTLAPFSQVSCHIVKLVLRNNALSTLRGIENLMSLEELDVSYNIISNFSELEFLASLIDLRSLWLEGNPLCCARWYRAQVFSFFSYPEKASSYCLHLLSVLYCANQLKLDEKEINTIDFWKRQIIIATMQKQPASFGIYVPAKDEAIVEGSNNRRICRLACIESEEEITSICSDEESVSCANEIQNREEEALSDEEAEIEDLINKVEHMKKERSILWLQGFKDWMDITSDKSMETYKEDRAALLHHLKENYIRNKTNQEQHGEVSRYASDSVIASGDDSSMNILESDSSFVDMSASFHRQQYFDFRALLGNAGGASHSDSGGAERLKGLSLERISSSLSQSISFHSDTNTIHGSHKIAENIDTSPLTTIRDKSGSQASSACHTSPPHFEEDLLHRRQHLVEEILQLSVNSFSMASSDSNTSCSEVDYTEFEPPVPEGDNIPCKNYVNGSVDGYISQNQFKDKFNNPSQRIPHAIENGISLFSSTSDQTSQHGSFDFVAGADNGKRAFFVSQDADLSEKIKTKRKAKKRVISILEENLDCNACDYQQEKISQGEIYANSKRELDVDEFSGGNCSTPENDDFIVTYFNMHIADSEASEICSHCIRCDCVLQMEAMYSEREVAILLSSHKKLYVLLISVVSDGSGSGLNLLNCHKLDEVCEVLVGMGLLVLRVKFESGETYLFVTKSIEKSREILCRIHMLDSCGGNGRCSIRSLEQVQVELFDNQICGGSNVSIYQYAMVLVCYNNGSDQSWLSRSLFVIDGYVLFCIEDVKQMYSFSTDASFSPYFKVDSFCSITDITELVIEVGDNSWCVTLAMKSLMAEFVPSTITNLEAVNHGNTAPGSIKLKLHWYSKDNLLKFVSLMKAIHAEKAVSPLVVRCIS 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0930 1104 SMART LRR_sd22_2 212 233 - -
Lal16g0930 1104 SMART LRR_sd22_2 190 211 - -
Lal16g0930 1104 SMART LRR_sd22_2 257 278 - -
Lal16g0930 1104 SUPERFAMILY L domain-like 176 309 - -
Lal16g0930 1104 ProSiteProfiles Leucine-rich repeat profile. 259 280 IPR001611 GO:0005515
Lal16g0930 1104 Gene3D Ribonuclease Inhibitor 70 233 IPR032675 -
Lal16g0930 1104 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 2 1100 - -
Lal16g0930 1104 Coils Coil 410 437 - -
Lal16g0930 1104 Gene3D Ribonuclease Inhibitor 234 341 IPR032675 -
Lal16g0930 1104 PANTHER NISCHARIN RELATED 2 1100 - -
Lal16g0930 1104 ProSiteProfiles Leucine-rich repeat profile. 214 235 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0930 Lal-Chr16 6171686 6181208 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0930 - - gmx:100788364 1579.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0930 16 6171686 6181208 Lal16g0930 16 6171686 6181208 ECH
Lal16g0930 16 6171686 6181208 Lal23g0704 23 9698945 9710834 LSH