Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0631 ATGGCGGTGGAGTATTCGTGCTGTGAAACACAGTTCTTTGTAAACATAGTAGTAATAGTGTTGCTGGTGTTGTTCGCTGGGTTGATGTCAGGACTCACTTTGGGGCTCATGTCTTTGAGTTTAGTTGATCTTGAAGTTCTTGCTAAGTCTGGTACTCCTCAGGATCGTAAGCATGCTGAGAAGATATTGCCTGTTGTCAGAAATCAACATTTGTTGCTTTGCACCCTGCTAATTTGTAATGCTGCAGCCATGGAGACGCTTCCTATTTTTCTTGATAGTCTTGTTACTGCATGGGGTGCTATCCTGATTTCTGTGACATTAATTCTTCTGTTTGGTGAGGCAAAGTTTTTTACGGGGAAGGGGGGAGGGGGAAATGTGCACTTGGCGGGGTTTGAACCAGTGCTCTGGCTTATGTTTACTCCTGTGAAGATTATACCCCAATCAGTTTGTTCCCGGTATGGTTTAGCAATTGGTGCAATGGTGGCTCCCTTTGTCCGTGTACTTGTATGGTTGTTGGACTATTTGCTTGGCCATCGACAAGAAGCTCTTTTCCGCAGAGCCGAGTTAAAAACACTTGTGAATTTGCATGGCAATGAGGCTGGAAAAGGTGGGGAACTGACACATGATGAAACAACAATCATTGCTGGGGCGCTTGAACTCAGTGAGAAGACAGCCAGTGATGCCATGACTCCTATATCTGAAACGTTTGCCATTGATATTAATTCAAACCTTGATAGGGAACTGATGAATGAAATATTGGAGAATGGGCATAGTAGAATCCCAGTCTATTATGAGCAGCCTACAAACATTATTGGACTTGTGCTGGTCAAGAATTTATTAACAATTCATCCGGAAGATGAAACACCTGTGAAGAGTGTAACCATACGCAGGATTCCAAGGGTTCCAGAAAGTATGCCACTTTATGACATTTTGAATGAGTTCCAGAAGGGCCATAGCCACATGGCTGTTGTTGTAAGACGGTGTGACAAGACAGGACAACAATCTTCCAAAAACTATGCCGATGTGAGAGATGTGAAAGTGGATATTGATGGTGAAAAGCTTCCCCAAGAGAAAGTTGGGAAAACCAAAATGGCAATCCATAAGTGGAAAAGTTTTCCCAATACAAACAAGTCAGTTAAGGGTGGTTCTCGGATCAGAAAATGGTCAAAAAATATGTACTCAGATATTTTGGAGATAGATGGTAGTCCGCTTCCAAAGCTCCCTGAAGAAGAAGAAGTCGTTGGATTAATTACGATGGAAGATGTCATTGAAGAGCTTTTACAGGAGGAGATCTTTGATGAAACGGATCATCATTTTGAAGACTCATGA 1329 0.4244 MAVEYSCCETQFFVNIVVIVLLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAEKILPVVRNQHLLLCTLLICNAAAMETLPIFLDSLVTAWGAILISVTLILLFGEAKFFTGKGGGGNVHLAGFEPVLWLMFTPVKIIPQSVCSRYGLAIGAMVAPFVRVLVWLLDYLLGHRQEALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELSEKTASDAMTPISETFAIDINSNLDRELMNEILENGHSRIPVYYEQPTNIIGLVLVKNLLTIHPEDETPVKSVTIRRIPRVPESMPLYDILNEFQKGHSHMAVVVRRCDKTGQQSSKNYADVRDVKVDIDGEKLPQEKVGKTKMAIHKWKSFPNTNKSVKGGSRIRKWSKNMYSDILEIDGSPLPKLPEEEEVVGLITMEDVIEELLQEEIFDETDHHFEDS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0631 442 CDD CBS_pair_CorC_HlyC_assoc 224 325 IPR044751 -
Lal16g0631 442 ProSiteProfiles CNNM transmembrane domain profile. 8 210 IPR002550 -
Lal16g0631 442 Gene3D - 392 434 IPR046342 -
Lal16g0631 442 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 113 IPR045095 GO:0010960
Lal16g0631 442 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 142 442 IPR045095 GO:0010960
Lal16g0631 442 PANTHER AND COBALT EFFLUX PROTEIN CORC, PUTATIVE-RELATED 142 442 - -
Lal16g0631 442 PANTHER AND COBALT EFFLUX PROTEIN CORC, PUTATIVE-RELATED 1 113 - -
Lal16g0631 442 Gene3D - 210 344 IPR046342 -
Lal16g0631 442 ProSiteProfiles CBS domain profile. 229 290 IPR000644 -
Lal16g0631 442 SUPERFAMILY CBS-domain pair 213 428 IPR046342 -
Lal16g0631 442 Pfam Cyclin M transmembrane N-terminal domain 18 113 IPR002550 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0631 Lal-Chr16 4037856 4042465 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0631 K16302 - gmx:100801937 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0631 16 4037856 4042465 Lal15g0567 15 3928947 3933753 LSH