Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0543 ATGCAGATCGGTTTCGCCACGGTGGCCGGAGATGACAAAAATCCCTTCACCCCAAAGGCTTATCTCATTCGCTACTGGGACAAGGAGATCCGCAACAACCTTCCTAAGCCATCATTCCTTTTCTCCAAAGCCTCCACGTTGAACGCCGTAGATGCGGCGGCGTTTGCGAAACTCGCCGCTGTAGATGGCGGCGCTGCTCTTTCCACGCGCCTCCCTGAATTTTGCACCGCAGCGAAGCTCCTTTGCTTTCCTGAATTGCAACCGAGTTTGGAAAAGCATGACAAAGATTCAAACTTTGCAGTGTACCAAGACAAAAACTTCACCAATTACGGAACGGGTCGACCCGGTGGTCTCGACTCGTTCAAGAATTACTCAGAATCAGAGAATATTCCGGTGAACGATTTCCGCCGATACAGCCGCAACTCTGCCGGTCATAAAGACAGTTTCCTCAGTTACGCCAACGACGGAAACGTCCCTGAGCAGACCTTCCACACTTACGGTGCCGGAGCCACCGGAGGATCCGGCGATTTCAAAGTCTACGCCGACGAAACTAACGTCCCTGACATCCGTTTCACAACTTACTCCTCCGACGCAAACGGAAGAACACAATCCTTCACTTCCTACTCCGAAAACGGCAATGCGGGAGAACAAACATTCACATCATATGGCAAAAACGGTAATGGTCCTGGGAACCAGTTTTCCTCGTACGGAAAAGGCTCCAACGTTGTCAGTTCCGGTTTTTCCAATTACGCTGAAACCGCAAATGGCGCCAATGACAGTTTCACAAGTTATAGTTTTGACATGAACAACCCCACTAACGATTTCAAAAACTATGCTGATGGTGGCAACGGTGTTACAGAAACTTTCTCTAGTTACCGTGACCAAGCCAATGTTGGTGCTGACTCTTTCAGTTCTTATGCTAAAAATTCCAATGCTGCTGAAGTTGGTTTCAGCAACTATGGCAAAACATTCAATGAAGGAATAGACAGATTCACAGGTTATGGAAAAGGTGCAACCGGTGAAAGTAAGGTTGGATTTACAACCTACGGTGTTAACAACACGTTTAAGGAGTATAACAAGGAAGATGTTTCTGTCTCTTTTTCAAGGTATACTAATGTGAGTTCTGGTGGTTCAGTGTCTAAAAGTGCTGCAAAAGTGAGTGATAATTTGGTCAAAAAGTGGGTTGAACCGGGAAAATTCTTCAGAGAGAAGATGATGAAGGAAGGGACTGTGATGCCTATGCCTGATATTAGAGATAAGATGCCACAAAGGTCGTTTTTGCCTCGGAGCATTTTGTCCAAATTACCCTTTTCATCATCCAAGATTTCGGAGTTGAAGAAGATCTTCAAGGCTTCTGATAATAGTTCAATGGAGAAAATGATGAAGGACTCTTTGACTGAGTGTGAGAGAGTCCCAAGCCCTGGTGAGACAAAACGGTGCATTGGGTCAATGGAGGACATGATTGATTTTGCAACTTCGGTTTTGGGTCGAAATGTGGTGCCTCGGAGTACCGAGAATGTGAATGGGTCAAAGAAGAAAGTGATGGTGAGTAATGTTAAAGGGATCAATGGTGGAAAAATCACACAATCTGTGTCTTGTCACCAAAGTTTGTTTCCTTATTTGCTCTACTACTGCCACTCTGTGCCTAAGGTTCGGGTTTATGAAGCGGATCTACTTGACCCTAGTACCAAATCCAAAATTAACCATGGTGTTGCAATTTGTCATTTGGATACCTCTGTATGGAGCCCCACCCATGGTGCATTCATGGCTCTCGGGTCGGGTCCGGGTCGGATTGAAGTTTGCCATTGGATCTTTGAGAATGACTTGACTTGGACCACTGCTGATTGA 1848 0.4589 MQIGFATVAGDDKNPFTPKAYLIRYWDKEIRNNLPKPSFLFSKASTLNAVDAAAFAKLAAVDGGAALSTRLPEFCTAAKLLCFPELQPSLEKHDKDSNFAVYQDKNFTNYGTGRPGGLDSFKNYSESENIPVNDFRRYSRNSAGHKDSFLSYANDGNVPEQTFHTYGAGATGGSGDFKVYADETNVPDIRFTTYSSDANGRTQSFTSYSENGNAGEQTFTSYGKNGNGPGNQFSSYGKGSNVVSSGFSNYAETANGANDSFTSYSFDMNNPTNDFKNYADGGNGVTETFSSYRDQANVGADSFSSYAKNSNAAEVGFSNYGKTFNEGIDRFTGYGKGATGESKVGFTTYGVNNTFKEYNKEDVSVSFSRYTNVSSGGSVSKSAAKVSDNLVKKWVEPGKFFREKMMKEGTVMPMPDIRDKMPQRSFLPRSILSKLPFSSSKISELKKIFKASDNSSMEKMMKDSLTECERVPSPGETKRCIGSMEDMIDFATSVLGRNVVPRSTENVNGSKKKVMVSNVKGINGGKITQSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDPSTKSKINHGVAICHLDTSVWSPTHGAFMALGSGPGRIEVCHWIFENDLTWTTAD 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0543 615 Pfam BURP domain 400 612 IPR004873 -
Lal16g0543 615 SMART BURP_2 398 614 IPR004873 -
Lal16g0543 615 ProSiteProfiles BURP domain profile. 400 614 IPR004873 -
Lal16g0543 615 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 12 615 - -
Lal16g0543 615 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 12 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0543 Lal-Chr16 3481001 3484093 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0543 - - gmx:100776642 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0543 16 3481001 3484093 Lal16g0543 16 3481001 3484093 ECH
Lal16g0543 16 3481001 3484093 Lal15g0489 15 3348335 3351289 LSH