Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0535 ATGTTGGGTGGCAACAACGGGAATCATGTGCTTCCTGTTTTCCTTGACGAGACTCAATTTCGATATCAAAATAATACAGCAAATCAGTTGCAGCTGTTTGGAAATTTACAAGCTGGATGTGGTGTTGATCCAATTAATTACTTTGGAAATGAACATATTAATTCCATGAGTCAGCCTAATAAACGAAGCAGCGAAATGGAAAATATCTCAAAGCAGCAAAAGCTTCAGATTTCCTTAAATTACAACATCTTTCAAGATGATGCTAACCGATCAAGAATCATTCCAAACCGTAACCCTGTGTCAACTGGATTGAAGCTTTCATATGATGATGATGAGCACAACTCATCTGTCACGTCTAGTGGCAGTATGAGTGCCACACCTTCAATCATGTTGTCCCTTGGTGACAATATCAGAAATGAGTTTGATAGGCAGCAAGATGAGTTTGATCAGTATATTAAAATTCAGAAGGAACAATTGTCAAAAGGTGTAAGAGACTTGAAGCAAAAACACATGGCTACTCTCATTACGTCCGTTGAGAAAGGTATCTGTCAGAAGCTAAGGGAAAAAGATGTGGAGATAGAGAACATGAACCGGAAGAACAGGGATCTAGCAGAGAGAATAAAACAGGTGGCTATTGAAGTGCAAAACTGGCACTACAAAGCAAAGTATAACGAGTCAGTTGTCAATGTGTTAAGGAACAATCTCCAGCTCGCCATTTCACAAGGAGTCGAACAAGGGAAGGAAGGATTTGGGGATAGCGAAGTTGATGATGCTGAATCATACATAGATCCCAGTAACTTCCTGAGCATCCCGGTCGTGCCTATGAAGTCTACTTACAAGAGCTCCCGATGCATGGAGAATATGAGTTGCAGGGCATGCAGGGCAAAGGAGGTATCTATGTTGTTAATGCCCTGTAGGCACCTGTGCTTGTGTAAGGACTGTGATGGGTTTGTGAATGTTTGTCCTATATGCCAATTGATAAAAACTGGAAGTGTTGAGGTCTATGTGTCTTAA 1014 0.4093 MLGGNNGNHVLPVFLDETQFRYQNNTANQLQLFGNLQAGCGVDPINYFGNEHINSMSQPNKRSSEMENISKQQKLQISLNYNIFQDDANRSRIIPNRNPVSTGLKLSYDDDEHNSSVTSSGSMSATPSIMLSLGDNIRNEFDRQQDEFDQYIKIQKEQLSKGVRDLKQKHMATLITSVEKGICQKLREKDVEIENMNRKNRDLAERIKQVAIEVQNWHYKAKYNESVVNVLRNNLQLAISQGVEQGKEGFGDSEVDDAESYIDPSNFLSIPVVPMKSTYKSSRCMENMSCRACRAKEVSMLLMPCRHLCLCKDCDGFVNVCPICQLIKTGSVEVYVS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0535 337 PANTHER S-RIBONUCLEASE BINDING PROTEIN SBP1-RELATED 4 336 - -
Lal16g0535 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 337 IPR013083 -
Lal16g0535 337 Coils Coil 186 213 - -
Lal16g0535 337 PIRSF SBP1_RNase_bind 1 337 IPR017066 -
Lal16g0535 337 Pfam Zinc finger, C3HC4 type (RING finger) 287 325 - -
Lal16g0535 337 ProSiteProfiles Zinc finger RING-type profile. 290 325 IPR001841 -
Lal16g0535 337 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 4 336 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0535 Lal-Chr16 3418152 3422016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0535 290 325 Miscellaneous Gene Families AT2G21380 44.444 4.36e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0535 K19042 - gmx:100791550 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0535 16 3418152 3422016 Lal16g0535 16 3418152 3422016 ECH
Lal16g0535 16 3418152 3422016 Lal15g0482 15 3298747 3303081 LSH