Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0513 ATGAAGTTCATGAAACTAGGATCTCGTCCAGATACTTTCTACACTGCAGAGGCAGTAAGGTCAGTCTCTTCTGAAGTTTCCAGTGACCTCCTCATTCAAGCTAAAGGAACTAGATATCTTCTTCATAAGTTTCCACTGCTGTCGAAATGTTTGCGGCTGCAAAGGTTGTGTTCAGAATCTCCTGATTCTCCTCAGCACCAAATAGTCCAACTCCCTGATTTCCCTGGTGGGGTGGAGGCATTTGAGCTGTGTGCTAAGTTCTGCTATGGAATTACCATCACTCTCAGTCCTTACAACATTGTCGCTGCGCGGTGTGCCGCTGAATACCTGCAGATGACTGAGGATGTTGAGAAGGGTAATTTAATTTGTAAGCTTGAGGTTTTTTTCAATTCTTGCATTCTTCATGGATGGAAGGATTCTATTGTGGCTCTTCAGACCACCAAAGCAATGCCTTTGTGGTCACAAGACTTGTCTATTACCACCAGATGCATTGAAGCTGTTGCCTCAAAAGTCTTAAACAATCCCTCAAAGGTGAGTTTGTCACACACTCATTCTAGAAGGGTCAAGGATGAAGTGTCTTGCAATGGAACTGAAAGCCTGAAACATCATAAATCAGCAAGTAAAGGATGGTGGGCTGAAGATTTAGCTGAACTTAGCATAGACCTGTATTGGAGAACCATGATAGCAATCAAATCAAGTAGCAAATTACCCTCCAAACTCATCGGTGAAGCATTAAAAATCTATGCATCTAGATGGCTACCAATTATTACAAGTAATGGACTTGTCAAGAAGCAAACTTCATCTGATTCAGAGTCATCGGACTCAGCAGGCGAAATAACTTTGAAGCATCGCCTGCTTTTGGAATCAATAGTAAGCTTGCTTCCAGCAGAGAAAGGTGCTGTTTCTTGTAGCTTCCTTCTAAAACTCTTAAAGGCATCCAATATTCTTAATGCTTCTTCATCTTCAAAGTTGGAATTAGCTACAAGGGTAGGACTTCAATTGGAGGAAGCCACAATGAATGATCTTTTAATACCCTCACTGTCTTACAAAAATGATACACTCTATGATGTTGAAGTGGTGATGACCATATTGGAACAGTTTATGTCACAAGGGCAGAGTCCTCCAACTAGCCCTCCAAGGTCCAGGTTGGCCTTTGAAAGAAGGAGATCTCGTTCCGCGGAGAATATTAATTTTGAATTTCAGGAGAGTAGGAAATCCTCTTCAGCATCTCACAGTTCAAAATTGAAGGTGGCGAAGATTGTGGATAAGTACCTTCACGAAGTTGCCAGGGATGTTAATTTTCCATTATCAAAATTCATTGCTCTTGCTGAGATTATACCAGATTTTGCAAGACATGACCATGATGATCTCTACAGAGCTATTGACATTTATCTAAGGGCTCATCCAGAACTCAACAAGAGTGAAAGGAAAAGACTGTGTCGAATTCTTGATTGCAAAAAACTGTCTATGGAAGCATGCATGCATGCTGCACAGAATGAACTACTCCCCCTAAGGGTTGTTGTCCAAGTTCTATTCTTTGAGCAAGCTAGAGCAGCAGCGACAGCAGCAGGTGGGGGAAAAGTGACTGATTTGCCAAGCAATATAAAGGAATTGCTCGCCACACATGCCATTGATCCATCAAAATATGCAGCACCTTTAAGCACCACCACAAGTATACATGCTGAGGACAATTTGAGTGTCTCAGGTTTCAAGTCACCAAAATCAAGGTCTTCAACTCTGAGGATGAAGCTAGCTGAGGAAGATGATTTAGATGAAAATTATGCCCTCCGCAATGGAATTGTGAGAAATTCTAGATTTAAGTACATCTGTGCTATTCCTACCCAACCCAAAAAAATGTTTTGTAAGTTGTGGTCTACCAATAGAAGTGCCAATGAGAAGAATTGA 1905 0.4147 MKFMKLGSRPDTFYTAEAVRSVSSEVSSDLLIQAKGTRYLLHKFPLLSKCLRLQRLCSESPDSPQHQIVQLPDFPGGVEAFELCAKFCYGITITLSPYNIVAARCAAEYLQMTEDVEKGNLICKLEVFFNSCILHGWKDSIVALQTTKAMPLWSQDLSITTRCIEAVASKVLNNPSKVSLSHTHSRRVKDEVSCNGTESLKHHKSASKGWWAEDLAELSIDLYWRTMIAIKSSSKLPSKLIGEALKIYASRWLPIITSNGLVKKQTSSDSESSDSAGEITLKHRLLLESIVSLLPAEKGAVSCSFLLKLLKASNILNASSSSKLELATRVGLQLEEATMNDLLIPSLSYKNDTLYDVEVVMTILEQFMSQGQSPPTSPPRSRLAFERRRSRSAENINFEFQESRKSSSASHSSKLKVAKIVDKYLHEVARDVNFPLSKFIALAEIIPDFARHDHDDLYRAIDIYLRAHPELNKSERKRLCRILDCKKLSMEACMHAAQNELLPLRVVVQVLFFEQARAAATAAGGGKVTDLPSNIKELLATHAIDPSKYAAPLSTTTSIHAEDNLSVSGFKSPKSRSSTLRMKLAEEDDLDENYALRNGIVRNSRFKYICAIPTQPKKMFCKLWSTNRSANEKN 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0513 634 Pfam NPH3 family 210 493 IPR027356 -
Lal16g0513 634 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 1 631 - -
Lal16g0513 634 Gene3D Potassium Channel Kv1.1; Chain A 15 118 IPR011333 -
Lal16g0513 634 SUPERFAMILY POZ domain 21 115 IPR011333 -
Lal16g0513 634 ProSiteProfiles NPH3 domain profile. 209 517 IPR027356 -
Lal16g0513 634 PANTHER OS12G0117600 PROTEIN 1 631 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0513 Lal-Chr16 3252319 3255522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0513 26 530 EF-hand Containing Proteins AT3G44820 34.652 2.78e-92 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0513 - - gmx:100797361 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0513 16 3252319 3255522 Lal16g0513 16 3252319 3255522 ECH
Lal16g0513 16 3252319 3255522 Lal15g0458 15 3101298 3104137 LSH