Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0450 ATGGCCAAAAAGAAAACAAAGGACCCAAAACAAACCCCTCAAACCGACGCCGTTTTACCCCCTACTGGTCTTTTCAGCACTCTCTTCGGTAACGCGCCGGAACAGAGTCCTAACATCGCCGCCGCCGATTCTCTTTTTTCCGACAACAACCCATTTCGAAGAAAGCCTCAACAATATGCTGCAACTTCCGAATCAAACAAACCCACCCAAACCCTTAATGTGGACCCCATTGATGAGAAGAAGAGGAAGCGTAACAAGGAGGACAAAAATCCTACCGCTACTGCTGATTCCAATTCCATAGTCGAAGTTTCAGAGAGAAAGAAGGATAAAAAGAAGAAGAAACAAGCTTCTGATGAAGCGAACAAAGATTCTGACTTGGTTGTGGAACCAATTGTGAACAGCGAGGTTGCGAATGAAGACAATGAGAGAAAGAAGAAAAAGAAGAAGAAGAAATCGGCTTCTGATGACGAGAACCAAGGTTCTTACTTGGTTGTGGAACCAATTGAAAATGGCGAAGTTGCAAAAGAAGGCGATGAGAAGAAGAAGAGGAAAAGAGAGGATCTTGAGAAAGAATGGGAGGACAAGATGTATGGGATTGTAGAGGGTGAAGAAAAAATTGAAGGTGAAGGATTGGAGAAGAAGAAAACTGTTGGGAGCAAGAGGAAGACATTGGATAATGCAGCTGATATGCTTGTTTCGAAGGAAGGTTTCGACGACGAGGATAAGCTTTTGAGAACTGTTTTTCTTGGGAACTTGCCTCTTAAGGTGAAGAAGAAGACTTTGTTGAATGAGTTCAAGAAATTTGGTGAGATTGAATCTGTGAGGATACGTTCTGTTCCAATACAAGATACCAAAAAACCCAGGAAGGGAGCTATTCTTGCAAAGAAAATAAATGATGATGGTGATAGTGTTCACGCTTACATTGTTTTCAAAGCAGAGGATTCTGCTCAGGCTTCTTTGTCACACAACATGACTGTGGTTGAAGGAAATCACATTCGTGTTGACAGGGCATGCCCACCCCGCAAGAAACTGAAAGGGGAGAAGGCTCTGCTTTATGACAACAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTGAAGGATGAAGAACTATATCAGTTATTTTGTGGTAAATCCAACCTGGAATCTGATGTAGAAGCTATTAGAGTTGTTAGAGATCCTCATCTCAATGTTGGAAAGGGTATTGCCTATGTGCTGTTTAAAACTCGGGAAGCTGCTAATTTTGTCATTAGGAAACGGAATATGAGGCTTCGAGACCGACAGTTGAGAATCTCCCATGCCAAAGCGGACGCCACCCCATCTAAAAGGCCACACCCATCACCTGCAGGAGATGTTAGGACCCCTCCTGCAAAGAAGTTTGCCATGGCTTCAAGGTCTCCTTTAAGCAGTGATAGCAGGTCAAACAAGAAAGTTAATACATCTTATCAGGGTCTGCGTGCAAACAAATCTGATGTTCAAAAGAGAACTTATGGGGGAGAAAAACCAAAAGAACGCTTGGTTAAAAGACCATCAGTTGCTGCCCGAAAGGCTAAAGTAAACTCGCAAAAGGATGGTGCTCCTCCATCAAAACAAGCAGCAGGGGTAAAGCGAAAGTTCGATAAGAGCACTCCGGATAGCTCCCTACGACAGAAGAAATTTCAAAAGAATAGGTAG 1677 0.4317 MAKKKTKDPKQTPQTDAVLPPTGLFSTLFGNAPEQSPNIAAADSLFSDNNPFRRKPQQYAATSESNKPTQTLNVDPIDEKKRKRNKEDKNPTATADSNSIVEVSERKKDKKKKKQASDEANKDSDLVVEPIVNSEVANEDNERKKKKKKKKSASDDENQGSYLVVEPIENGEVAKEGDEKKKRKREDLEKEWEDKMYGIVEGEEKIEGEGLEKKKTVGSKRKTLDNAADMLVSKEGFDDEDKLLRTVFLGNLPLKVKKKTLLNEFKKFGEIESVRIRSVPIQDTKKPRKGAILAKKINDDGDSVHAYIVFKAEDSAQASLSHNMTVVEGNHIRVDRACPPRKKLKGEKALLYDNKRTVFVGNLPFDVKDEELYQLFCGKSNLESDVEAIRVVRDPHLNVGKGIAYVLFKTREAANFVIRKRNMRLRDRQLRISHAKADATPSKRPHPSPAGDVRTPPAKKFAMASRSPLSSDSRSNKKVNTSYQGLRANKSDVQKRTYGGEKPKERLVKRPSVAARKAKVNSQKDGAPPSKQAAGVKRKFDKSTPDSSLRQKKFQKNR 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0450 558 CDD RRM2_RBM34 357 433 IPR034221 -
Lal16g0450 558 MobiDBLite consensus disorder prediction 74 91 - -
Lal16g0450 558 MobiDBLite consensus disorder prediction 101 125 - -
Lal16g0450 558 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 136 556 - -
Lal16g0450 558 SUPERFAMILY RNA-binding domain, RBD 352 448 IPR035979 GO:0003676
Lal16g0450 558 MobiDBLite consensus disorder prediction 171 187 - -
Lal16g0450 558 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 339 IPR000504 GO:0003723
Lal16g0450 558 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 356 437 IPR000504 GO:0003723
Lal16g0450 558 MobiDBLite consensus disorder prediction 433 558 - -
Lal16g0450 558 Coils Coil 136 156 - -
Lal16g0450 558 MobiDBLite consensus disorder prediction 535 558 - -
Lal16g0450 558 SMART rrm1_1 357 433 IPR000504 GO:0003723
Lal16g0450 558 SMART rrm1_1 246 335 IPR000504 GO:0003723
Lal16g0450 558 MobiDBLite consensus disorder prediction 1 187 - -
Lal16g0450 558 Gene3D - 241 344 IPR012677 -
Lal16g0450 558 PANTHER RNA-BINDING PROTEIN 34 136 556 - -
Lal16g0450 558 MobiDBLite consensus disorder prediction 466 491 - -
Lal16g0450 558 MobiDBLite consensus disorder prediction 28 73 - -
Lal16g0450 558 MobiDBLite consensus disorder prediction 494 512 - -
Lal16g0450 558 CDD RRM1_RBM34 245 335 IPR034220 -
Lal16g0450 558 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 289 IPR000504 GO:0003723
Lal16g0450 558 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 358 430 IPR000504 GO:0003723
Lal16g0450 558 SUPERFAMILY RNA-binding domain, RBD 238 345 IPR035979 GO:0003676
Lal16g0450 558 Gene3D - 351 443 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0450 Lal-Chr16 2793086 2797812 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0450 K14837 - gmx:100784494 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0450 16 2793086 2797812 Lal16g0450 16 2793086 2797812 ECH
Lal16g0450 16 2793086 2797812 Lal15g0401 15 2725818 2729595 LSH