Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0401 ATGGCGAAAAAGAAAACAAAAGACCCAAAACAAAACCCTCAAACCGACGCCGTTTTACCCCCTTCTGGCATTTTCACCACACTCTTCGATAACGCGTCGGAAGATATTCCCACCGTCGCTTCCTCCTCCTCCGCCTCTCTATTTTCCGATAACAACCCATTTCGAAGAAAGCCTCAACAATATGTTCCCATTTCTGAATCACCCAAATCCTCTCAAACCCTAAACAATGGCGTCTCCGAGAACCACGATTCCATTGATGACAAGATGAGGAAGCGGAACAAGGAGGAGAAAACAACCACCGCAACTGCTGACCCCAATTCATTAATCGAAGTTTCAGAGAAGAAGGATAAAAAGAAGAAGAAACAAGCTTCTGATGAAGAGAACAAAGGTTCTGCACTGTCTGTGGAACCAATTGGGTACAGCGAGGTTGCGAAGGAAGATGATGAAACTGAGAGGAAGATGAAAAAGAAGAAGAAGAATCATGGTTCTGATGAAGAGAACAAAAGTTGTGACTTGATTGCAGAAACAACTGAAAAAGGCGAGGGTGATAATGAAGGCGATGAGAGGAAGAATAAGAGGAAAAGGGAAGAGCTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGGTGATGGAAGGTGAATTGGAGGGAGAAGGGTTGGAAAAGAAAACTGTTGGGAAAAAGAGGAAAACATTGGATAATGCTGCTGATATGCTTGTTCCGAAGGAAGGTTTCGATGACGAAGATAAGCTCTTGAGGACTGTTTTTGTTGGAAATTTGCCTCTTAAGGTGAAGAAGAAAACTTTGTTGAACGAGTTTAAGAAATTTGGTGAGGTTGAATCTGTGAGGATTCGTTCTGTTCCAATACAAGATACCAAAAAACCTAGGAAGGGAGCTATTCTTGCAAAGAAAATAAAAGACGATGGTGATAATGTTCATGCATACATTGTTTTCAAAACAGAGGAATCTGCCCAGGCTTCTTTGTCACACAATATGGCTGTGGTGGAAGGAAATCACATTCGTGTTGACAGGGCATGTCCACCCCGCAAGAAACAGAAAGGCGAGAGTGCTCTGCTTTATGATAACAAGAGAACAGTTTTTGTGGGCAACCTCCCATGTGATGTGAAGGATGAAGAACTATATCAGTTATTTTGTGGTAAATCCGACCTGGAATCCAATGTAGAAGCTGTTAGAGTCATTAGAGATTCTCATCTTAATGTTGGAAAGGGAATTGCCTATGTGCTGTTTAAAACAAGGGTATGCTGTTTTGGTGCCTGA 1275 0.4227 MAKKKTKDPKQNPQTDAVLPPSGIFTTLFDNASEDIPTVASSSSASLFSDNNPFRRKPQQYVPISESPKSSQTLNNGVSENHDSIDDKMRKRNKEEKTTTATADPNSLIEVSEKKDKKKKKQASDEENKGSALSVEPIGYSEVAKEDDETERKMKKKKKNHGSDEENKSCDLIAETTEKGEGDNEGDERKNKRKREELEKEWEEKKYGVMEGELEGEGLEKKTVGKKRKTLDNAADMLVPKEGFDDEDKLLRTVFVGNLPLKVKKKTLLNEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKIKDDGDNVHAYIVFKTEESAQASLSHNMAVVEGNHIRVDRACPPRKKQKGESALLYDNKRTVFVGNLPCDVKDEELYQLFCGKSDLESNVEAVRVIRDSHLNVGKGIAYVLFKTRVCCFGA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0401 424 SMART rrm1_1 253 342 IPR000504 GO:0003723
Lal15g0401 424 SUPERFAMILY RNA-binding domain, RBD 252 420 IPR035979 GO:0003676
Lal15g0401 424 CDD RRM1_RBM34 252 342 IPR034220 -
Lal15g0401 424 MobiDBLite consensus disorder prediction 141 200 - -
Lal15g0401 424 Gene3D - 248 351 IPR012677 -
Lal15g0401 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 346 IPR000504 GO:0003723
Lal15g0401 424 Gene3D - 352 421 IPR012677 -
Lal15g0401 424 MobiDBLite consensus disorder prediction 1 23 - -
Lal15g0401 424 MobiDBLite consensus disorder prediction 81 99 - -
Lal15g0401 424 PANTHER RNA-BINDING PROTEIN 34 49 418 - -
Lal15g0401 424 MobiDBLite consensus disorder prediction 109 127 - -
Lal15g0401 424 MobiDBLite consensus disorder prediction 37 200 - -
Lal15g0401 424 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 49 418 - -
Lal15g0401 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 365 418 IPR000504 GO:0003723
Lal15g0401 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 296 IPR000504 GO:0003723
Lal15g0401 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 363 424 IPR000504 GO:0003723
Lal15g0401 424 MobiDBLite consensus disorder prediction 37 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0401 Lal-Chr15 2725818 2729595 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0401 K14837 - gmx:100784494 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0401 15 2725818 2729595 Lal15g0401 15 2725818 2729595 ECH
Lal16g0450 16 2793086 2797812 Lal15g0401 15 2725818 2729595 LSH