Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0431 ATGGCTGCATTGCAATACTTGGACACGTTACGAAACTCGCACCCTGAACTCTCCGATTGGTACAATTCTCTTGCAGATCTGTACCAGAAGAAGCTATGGCATCAACTCACTCTCAAACTCGAACAGTTCGTTGCTCTCGCTGTTTTTCAGGCCGGTGATGCTCTTATACAGTTATATCACAATTTCATCACTGACTTTGAGACAAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTGATAGTTTCTCGTCAGTATGCTGAGAAAGAAGCTGCTGTTGGTTATCTTGAAGGAATCATTGAGAAGCTTCAAGCAACTAGAGAACAGCGAATTGAAGAACCTATTCTTTACATTAAGATGCAAATAGCAATTTTTAAGCTTGAGCAGGGTGACCAGAAGGAGTGCAAGAAACTTCTAGAAGATGGAAAAAGTACACTTGATAGCATGACAGATATTGACCCATCTGTGTATGCTAGCTACTACTGGGTATCATCCCAGTATCATAAGTCCCGCCAGGAATTTGCTGAGTTCTACAAAAGTGCTCTTCTCTATTTGGCATACACATCAGTGGAGTCTCTCTCAGATTCGTTCAAGCTGGATCTGGCATTTGATTTGTCCCTTTCTGCTTTGCTGGGGGATAACATCTACAACTTTGGGGAGCTACTTGCACATCCTATAATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAGGCATTCAATTCTGGTGATTTAGTTCGATATCAAGAATTATGTCGGGTTCATAATGCTGCTTTAAGGGCTCAACCAGCATTAGTTCAAAATGAAAAGAGGTTGTTGGAAAAGGTTAATATTCTCTGCCTGATGGAGATTATATTCAGTCGGCCTTCCGAAGATAGAACTATTCCCTTGAGTGTGGTTGCAGACCGTACAAAACTTTCTATAGAGGATGTGGAGCATCTCCTGATGAAGAGCCTATCTGTTCACCTAATCGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTTTCCTGGGTGCAGCCAAGAGTTCTGGGAATTCAACAGGTCAAATCCTTACGGGATCGACTGGACGGATGGACGGGAAAAGTACACACTGCGTTGTTGTCCATCGAAGCAGAAACACCTGATTTGATTGGATCATGA 1161 0.4255 MAALQYLDTLRNSHPELSDWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYAEKEAAVGYLEGIIEKLQATREQRIEEPILYIKMQIAIFKLEQGDQKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQYHKSRQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVQNEKRLLEKVNILCLMEIIFSRPSEDRTIPLSVVADRTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQVKSLRDRLDGWTGKVHTALLSIEAETPDLIGS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0431 386 Pfam PCI domain 238 343 IPR000717 -
Lal16g0431 386 ProSiteProfiles PCI domain profile. 174 347 IPR000717 -
Lal16g0431 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 1 385 IPR035298 -
Lal16g0431 386 SMART PINT_4 272 365 IPR000717 -
Lal16g0431 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 - -
Lal16g0431 386 SUPERFAMILY "Winged helix" DNA-binding domain 274 348 IPR036390 -
Lal16g0431 386 PANTHER PROTEASOME COMPONENT (PCI) DOMAIN PROTEIN-RELATED 1 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0431 Lal-Chr16 2609481 2614035 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0431 K03039 - gmx:100804455 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0431 16 2609481 2614035 Lal16g0431 16 2609481 2614035 ECH
Lal16g0431 16 2609481 2614035 Lal15g0374 15 2518067 2522424 LSH
Lal16g0431 16 2609481 2614035 Lal23g1141 23 12893965 12898225 LSH