Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0374 ATGGCTGCTCTGCAATATTTGGAATCGTTGCGAAACTCGCATCCTGAACTTTCTGAATGGTACAATTCACTCGCAGATCTGTACCAGAAGAAGTTATGGCATCAACTTACTCTCAAGCTTGAACAGTTTGTTGCTCTCGCTGTTTTTCAGGCTGGTGATGCTCTTATACAGCTATATCACAATTTCATCACTGACTTTGAGACAAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTGATAGTTTCTCGTCAGTATTCTGAGAAAGAAGCTGCTGTTGGTTATCTTGAGGGAATCATTGAGAAGCTTCAAGCCACTAGAGAACAGCGAATTGAAGAACCTATTCTTTACATAAAGATGCAAATAGCAATATTTAAGCTTGAGCAGGGTGATCAGAAAGAAAGCAAGAAACTTCTTGAAGATGGAAAGAGTACACTTGACAGCATGACAGATATTGACCCATCTGTGTATGCTAGCTACTATTGGGTATCATCCCAGTACCATAAATCCCGCCAGGAATTTGCTGAGTTCTACAAAAGCGCCCTTCTCTACTTGGCATACACATCAGTAGAGTCTCTCTCAGATTCTTTTAAGCTGGATTTGGCGTTTGATTTGTCCCTTTCTGCTTTGCTGGGGGATAACATCTACAACTTTGGAGAGCTTCTTGCACATCCTATAATTAAGAGCCTTCTAGGGACAAAGGTGGAATGGCTTTACTATATTTTGCAGGCATTCAATTCTGGTGATTTAGTTCGATATCAAGAATTATGCCGGGTGCATAATGCTGCTCTAAGGGCTCAACCAGCACTAGTTCAAAATGAACAGAGGTTGTTAGAAAAGATTAACATTCTCTGCCTGATGGAGATTATATTCAGTCGGCCTTCGGAAGATAGAACTATTCCCTTGAGTGTGATTGCAGACCGAACAAAACTTTCTATAGAGGATGTGGAGCATCTTCTCATGAAGAGCCTATCGGTTCACCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTTTCCTGGGTGCAGCCAAGAGTTCTGGGAATTCAACAGATCAAATCCTTAAGGGATCGACTGGACGGTTGGACAGGAAAAGTACACACTGCATTGTTGTCCATCGAGGCAGAAACACCTGATTTGATCGGATCATGA 1161 0.4177 MAALQYLESLRNSHPELSEWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYSEKEAAVGYLEGIIEKLQATREQRIEEPILYIKMQIAIFKLEQGDQKESKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQYHKSRQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVQNEQRLLEKINILCLMEIIFSRPSEDRTIPLSVIADRTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQIKSLRDRLDGWTGKVHTALLSIEAETPDLIGS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0374 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 - -
Lal15g0374 386 ProSiteProfiles PCI domain profile. 174 347 IPR000717 -
Lal15g0374 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 1 384 IPR035298 -
Lal15g0374 386 SMART PINT_4 272 365 IPR000717 -
Lal15g0374 386 Gene3D - 210 343 - -
Lal15g0374 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B-LIKE 1 384 - -
Lal15g0374 386 Pfam PCI domain 238 343 IPR000717 -
Lal15g0374 386 SUPERFAMILY "Winged helix" DNA-binding domain 274 348 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0374 Lal-Chr15 2518067 2522424 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0374 K03039 - gmx:100804455 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0374 15 2518067 2522424 Lal15g0374 15 2518067 2522424 ECH
Lal16g0431 16 2609481 2614035 Lal15g0374 15 2518067 2522424 LSH
Lal15g0374 15 2518067 2522424 Lal23g1141 23 12893965 12898225 LSH