Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0381 ATGGCATCTGGTACGGCATTCGGATCATTCGCCGGAAGGGCACTGATGGCGGCGGCGAAGAAGACGACGACGAAAACTACGGCGAAGTCAACGGTGTCGATCAGTGTGCGTCCGAGTAACAAGGCTGGGATACAGAAGGTGGTGCCTGTGTCTTCTGAGCTGGGAAAGTTCATCGGCGCTACTGAGGTTTCTCGAACCGGTGCTGTTAAGAAAGTTTGGGAATACATCAAACTCCAGAATCTTCAGAATCCTGAAAATAAGAGAGAGATATTTTGTGATGCAAAATTGAAGGCCATTTTTGATGGGAAAGATAAAGTTGGGTTCACTGAAATTGCCAGATTGCTTTCTAACCATTTTTCTAAATCAGCCTGA 372 0.4651 MASGTAFGSFAGRALMAAAKKTTTKTTAKSTVSISVRPSNKAGIQKVVPVSSELGKFIGATEVSRTGAVKKVWEYIKLQNLQNPENKREIFCDAKLKAIFDGKDKVGFTEIARLLSNHFSKSA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0381 123 CDD SWIB-MDM2_like 48 119 - -
Lal16g0381 123 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 123 - -
Lal16g0381 123 Pfam SWIB/MDM2 domain 48 119 IPR003121 -
Lal16g0381 123 SUPERFAMILY SWIB/MDM2 domain 42 121 IPR036885 -
Lal16g0381 123 ProSiteProfiles SWIB/MDM2 domain profile. 43 121 IPR003121 -
Lal16g0381 123 PANTHER PROTEIN TRI1-LIKE 1 123 - -
Lal16g0381 123 SMART swib_2 44 123 IPR019835 -
Lal16g0381 123 Gene3D SWIB/MDM2 domain 38 123 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0381 Lal-Chr16 2303379 2304670 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lal16g0381 SWIB 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0381 - - lang:109348964 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0381 16 2303379 2304670 Lal16g0381 16 2303379 2304670 ECH
Lal16g0381 16 2303379 2304670 Lal15g0324 15 2174598 2175944 LSH