Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0324 ATGACAATAGGTAGAGCATTTGGATCATTTACCGGAACAGCGCTGATGGCGGTGGCCAAGAAGACCACGGCCACGACGGCGACGGTGAAGACAACGGTGTCGACCAGTGCGCGTCCGAGTAACAAGGCTGGGATACAGAAGGTGGTGCCCGTGTCTTCTGAGCTAGGCAAGTTCGTTGGTGCTTCTCAAGTTTCTCGAACCGATGCTGTTAAGAAAGTTTGGGAATACATCAAACTCCAGAATCTTCAGAATCCTGAAAATAAGCGGGAGATATTTTGTGATGCAAAATTGAAGACCATTTTCGATGGGAAAGATAAAGTAGGGTTCACTGAGATTGCTAGATTGCTTTCTAACCATTTTGCGAAATCAGGTTGA 375 0.4667 MTIGRAFGSFTGTALMAVAKKTTATTATVKTTVSTSARPSNKAGIQKVVPVSSELGKFVGASQVSRTDAVKKVWEYIKLQNLQNPENKREIFCDAKLKTIFDGKDKVGFTEIARLLSNHFAKSG 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0324 124 Pfam SWIB/MDM2 domain 49 120 IPR003121 -
Lal15g0324 124 Gene3D SWIB/MDM2 domain 38 124 IPR036885 -
Lal15g0324 124 ProSiteProfiles SWIB/MDM2 domain profile. 44 122 IPR003121 -
Lal15g0324 124 SMART swib_2 45 124 IPR019835 -
Lal15g0324 124 PANTHER PROTEIN TRI1-LIKE 5 123 - -
Lal15g0324 124 SUPERFAMILY SWIB/MDM2 domain 43 122 IPR036885 -
Lal15g0324 124 CDD SWIB-MDM2_like 49 120 - -
Lal15g0324 124 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 5 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0324 Lal-Chr15 2174598 2175944 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lal15g0324 SWIB 5.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0324 - - lang:109348964 177.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0324 15 2174598 2175944 Lal15g0324 15 2174598 2175944 ECH
Lal16g0381 16 2303379 2304670 Lal15g0324 15 2174598 2175944 LSH