Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0341 ATGACAAATTCAAAAAAGAAAAATAAAGCGAATAAAACGACGACGTCAAAGGTCGGAGAAGAAGAGAGAACGTCCAAACCTTATAACCAGAAAACAAAAATGGGAAAGGATCTGAGCGATGACCAAATTTCTTCAATGAAGGAAGCTTTCACACTCTTCGACACCGACAGTGACGGTAAGATCGCTCCATCGGAGCTCGGAATCCTCATGCGCTCTCTAGGAGGCAACCCGACCCAGGCACAACTCAAAGCCATCGCAGCGGAAGAGAATCTCACCGCACCATTCGATTTCCCGCGATTCCTAGATCTGATGGCGAAGCACATGAAACCTGAGCCGTTCGATCGTCAACTCCGTGATGCATTCAAGGTTCTTGACAAGGACTCTACAGGCTTCGTCTCCGTTACGGAGCTCCGGCACATCCTCACTAGCATCGGGGAGAAGCTCGAGCCTACTGAGTTCGATGAGTGGATCAGGGAAGTCGATGTTGGCTCCGATGGCAAGATCCGTTATGAAGATTTCATCGCCCGAATGGTCGCTAAATGGAATTGGAATGAATTAGTAAAGGATCGCAATCCATCCCTCTTGCATTCAAAGCGAGCACTCTACGCTACACCTATACCATTTGAGCTGCTTTTCAATATGAGATTATCTCATCTTCATTAG 663 0.4721 MTNSKKKNKANKTTTSKVGEEERTSKPYNQKTKMGKDLSDDQISSMKEAFTLFDTDSDGKIAPSELGILMRSLGGNPTQAQLKAIAAEENLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDSTGFVSVTELRHILTSIGEKLEPTEFDEWIREVDVGSDGKIRYEDFIARMVAKWNWNELVKDRNPSLLHSKRALYATPIPFELLFNMRLSHLH 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0341 220 MobiDBLite consensus disorder prediction 1 40 - -
Lal16g0341 220 Gene3D - 114 178 - -
Lal16g0341 220 Pfam EF-hand domain pair 115 177 IPR002048 GO:0005509
Lal16g0341 220 ProSiteProfiles EF-hand calcium-binding domain profile. 41 76 IPR002048 GO:0005509
Lal16g0341 220 SUPERFAMILY EF-hand 38 177 IPR011992 -
Lal16g0341 220 SMART efh_1 152 180 IPR002048 GO:0005509
Lal16g0341 220 SMART efh_1 45 73 IPR002048 GO:0005509
Lal16g0341 220 SMART efh_1 116 144 IPR002048 GO:0005509
Lal16g0341 220 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Lal16g0341 220 MobiDBLite consensus disorder prediction 13 40 - -
Lal16g0341 220 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Lal16g0341 220 Pfam EF-hand domain 46 74 IPR002048 GO:0005509
Lal16g0341 220 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Lal16g0341 220 PANTHER - 34 180 - -
Lal16g0341 220 CDD EFh 47 85 IPR002048 GO:0005509
Lal16g0341 220 Gene3D - 36 112 - -
Lal16g0341 220 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Lal16g0341 220 CDD EFh 116 177 IPR002048 GO:0005509
Lal16g0341 220 PANTHER CALCIUM BINDING PROTEIN 34 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0341 Lal-Chr16 2050658 2053542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0341 34 180 EF-hand Containing Proteins AT1G12310 87.162 1.55e-92 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0341 K13448 - zju:107420771 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0341 16 2050658 2053542 Lal16g0341 16 2050658 2053542 ECH
Lal16g0341 16 2050658 2053542 Lal15g0275 15 1863624 1865081 LSH