Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0275 ATGGGTAAGGATCTTAGCGATGACCAAGTTTCTTCAATGAAAGAAGCTTTCACTCTCTTCGACACCGACGGTGACGGTAAGATCGCTCCATCGGAGCTCGGAATCCTTATGCGCTCTCTCGGAGGCAACCCCACCCAAGCCCAACTCAAAGCCATCGCGGCCGAAGAGAATCTCACCGCGCCCTTCGATTTCCCCCGATTTCTTGACCTAATGGCGAAGCACATGAAACCTGAGCCCTTCGATCGCCAGCTACGTGATGCATTCAAGGTTCTGGACAAGGAATCCTCCGGTTTCATCTCAGTGACGGAGCTCCGGCACATTCTCACTAGCATCGGCGAGAAGCTTGAGCCGGCTGAGTTCGATGAGTGGATCAGGGAAGTCGATGTTGGCTCCGATGGCAAGATCCGTTATGAGGATTTCATCGCCCGAATGGTCGCTAATAACCTCAAGGCATCACGATTCAAGAGTGCTTTGTCGAGATTTCCCCATTTGCTTCGTGAAGTATCTGACTTTTATTGTTGGAAGAAGACGGGCCCTCGTGTTGCTCCATATGATATAAAGTTCTTACTCCAAAGCACCGTGAAGGAATGTGGTCTTCACTGCAAGTGCAACCCAAAAGAGGGAAACTTCACCAATGGTCTTCACTACAAGTGA 654 0.5031 MGKDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKAIAAEENLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKESSGFISVTELRHILTSIGEKLEPAEFDEWIREVDVGSDGKIRYEDFIARMVANNLKASRFKSALSRFPHLLREVSDFYCWKKTGPRVAPYDIKFLLQSTVKECGLHCKCNPKEGNFTNGLHYK 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0275 217 Pfam EF-hand domain 13 41 IPR002048 GO:0005509
Lal15g0275 217 Gene3D - 1 49 - -
Lal15g0275 217 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
Lal15g0275 217 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Lal15g0275 217 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Lal15g0275 217 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Lal15g0275 217 SUPERFAMILY EF-hand 5 144 IPR011992 -
Lal15g0275 217 PANTHER CALCIUM BINDING PROTEIN 1 146 - -
Lal15g0275 217 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Lal15g0275 217 Gene3D - 62 160 - -
Lal15g0275 217 SMART efh_1 12 40 IPR002048 GO:0005509
Lal15g0275 217 SMART efh_1 119 147 IPR002048 GO:0005509
Lal15g0275 217 SMART efh_1 83 111 IPR002048 GO:0005509
Lal15g0275 217 CDD EFh 83 144 IPR002048 GO:0005509
Lal15g0275 217 CDD EFh 14 52 IPR002048 GO:0005509
Lal15g0275 217 PANTHER CALCIUM-BINDING PROTEIN CML13-RELATED 1 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0275 Lal-Chr15 1863624 1865081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0275 1 146 EF-hand Containing Proteins AT1G12310 87.755 6.68e-92 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0275 K13448 - tcc:18606356 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0275 15 1863624 1865081 Lal15g0275 15 1863624 1865081 ECH
Lal16g0341 16 2050658 2053542 Lal15g0275 15 1863624 1865081 LSH