Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0328 ATGGCAACTCCCCTGTTATTCCTATTGTTCATGCTCTGCATCTCACACTCTTCACAAATGCTTCTATTTCCACTCACACACTCACTTTTGAAAACCCAATTCAACAGTACCCACCACCTCCTCAAATCCACCTCCACCCGTTCCCTAGCCCGCTTCCACCGCTACCGCCACCGCCAAATCTCTCTCCCACTCTCACCAGGCAGCGACTACACCCTCTCCTTCAATTTAGGACCACACCACCATCCCCAACTCATCACCCTCTACATGGACACTGGCAGCGACCTCGTCTGGTTCCCATGCTCTCCTTTTGAGTGCATCCTCTGTGAAGGCAAACCCATCCCTAACCCTAAACTCAAGCCTCACAACCTCACCCTCTCTCAATCCGACGCCGTTTCGTGCCAATCACATGCATGCTCTGCCGCACATAGTCACGTTTCTAACTCTGACCTTTGCGCTATGGCACGGTGTCGTTTGGACAATATTGAAACACACGATTGCTCTTCTGCCACGTGTCCACCTTTTTACTATGCTTACGCTGATGGAAGCTTAGTCGCTAAACTTTACCGTAATACCCTCTCGATTTCTTCGCTTCTTCTTCATAACTTTACGTTTGGTTGCGCCCACACCACACTTGCTGAACCAACCGGTGTAGCCGGTTTCGGTCGCGGTGTATTGTCTTTCCCTGCTCAGCTTTCAATTTTGAATCCCAAACTTGGAAACCGTTTTTCTTATTGCTTGGTTTCTCACTCGTTTGAAGGGGAACGAGTTAACCCACCGAGTCCACTCATCCTCGGTCGTTACGATAGCACTGGAGATGAAGCTGATGAGTTTGTTTACACCTCCATGCTTCGAAACCCGAAGCACCCTTATTTCTACTGCGTTGGGCTCGCTGGAATCTCCGTTGGGAAGAAGAAACTTCCCGCGCCGGAGATGCTGAAAAAAGTGGATTATAAGGGAAATGGTGGTGTTGTTATTGATTCCGGCACGACGTTCACGATGTTACCGGCGAGTTTATATAACTCAGTGGTGACTGAGTTCGATGCTCGAGTCGGAAGAGTTCACGTGCGTGCGAGTGAGATTGAGAATAAAACGGGTCTTGCGCCGTGTTATTACTTGGACCGGGTTTCGGAGGTTCCAACGGTGACATTTCATTTCCTGGGGAACGATTCCAGTGTGGTCCTGCCTAGGAGGAACTACTTCTATGAGTTTTTAGACGGTCGTGATGAAGTTAGGAGGAAGAGGAAAGTGGGGTGCATGATGCTGATGAACGGTGGTGATGACACTGAGTTAATCGATGGGCCCGGAGCTACTCTTGGCAATTATCAACAGCAAGGGTTTGAGGTTGTGTACGACCTGGAAAAACAGCGCGTGGGTTTCGCCAAGAGGCAATGCGCTTTGCTCTGGGATAACCTAAACCATGGGAAAAAATAA 1431 0.4934 MATPLLFLLFMLCISHSSQMLLFPLTHSLLKTQFNSTHHLLKSTSTRSLARFHRYRHRQISLPLSPGSDYTLSFNLGPHHHPQLITLYMDTGSDLVWFPCSPFECILCEGKPIPNPKLKPHNLTLSQSDAVSCQSHACSAAHSHVSNSDLCAMARCRLDNIETHDCSSATCPPFYYAYADGSLVAKLYRNTLSISSLLLHNFTFGCAHTTLAEPTGVAGFGRGVLSFPAQLSILNPKLGNRFSYCLVSHSFEGERVNPPSPLILGRYDSTGDEADEFVYTSMLRNPKHPYFYCVGLAGISVGKKKLPAPEMLKKVDYKGNGGVVIDSGTTFTMLPASLYNSVVTEFDARVGRVHVRASEIENKTGLAPCYYLDRVSEVPTVTFHFLGNDSSVVLPRRNYFYEFLDGRDEVRRKRKVGCMMLMNGGDDTELIDGPGATLGNYQQQGFEVVYDLEKQRVGFAKRQCALLWDNLNHGKK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0328 476 ProSiteProfiles Peptidase family A1 domain profile. 70 460 IPR033121 -
Lal16g0328 476 Pfam Xylanase inhibitor N-terminal 70 249 IPR032861 -
Lal16g0328 476 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 323 334 IPR001969 GO:0004190|GO:0006508
Lal16g0328 476 Pfam Xylanase inhibitor C-terminal 292 460 IPR032799 -
Lal16g0328 476 PANTHER ASPARTYL PROTEASES 4 473 IPR001461 GO:0004190|GO:0006508
Lal16g0328 476 Gene3D Acid Proteases 267 467 IPR021109 -
Lal16g0328 476 CDD pepsin_A_like_plant 70 464 IPR034161 -
Lal16g0328 476 Gene3D Acid Proteases 58 265 IPR021109 -
Lal16g0328 476 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 4 473 - -
Lal16g0328 476 SUPERFAMILY Acid proteases 67 469 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0328 Lal-Chr16 1973745 1975175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0328 43 467 Miscellaneous Gene Families AT1G77480 26.039 9.17e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0328 - - adu:107488223 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0328 16 1973745 1975175 Lal16g0328 16 1973745 1975175 ECH
Lal16g0328 16 1973745 1975175 Lal15g0262 15 1790962 1792323 LSH