Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0074 ATGGATGGTTCATTTGACGATGAAGCCGAGCCATCTGTTGTTACAATCAAAGAGTATCTCGATGAAGTTGAGGAACGAGAACTGGCAGCTGATTTAGTTCTGGGGGGTGATGACGGCAAGGAATGTACCTACAGCAAAGGATACATGAAAAGGCAGGCAATTTTTTCTTGCCTCACCTGCACTCCAGATGGGAATGCTGGAGTTTGCACTGCTTGCTCATTGTCTTGCCATGATGGCCATGAGATCGTGGAACTATGGACAAAAAGGAACTTCAGATGTGATTGTGGCAATTCAAAGTTTGGTGAATTCTATTGCAAGATTTTCGCAGGCAAAGTTTCAGAGAATATTGAGAACTCATACAATCATAACTTTAAAGGTTTGTATTGCACATGTGGTCGCCCTTACCCAGATCCGGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTCCATGAGGAGCATCTTGGTCTTGAGTCTTCTGATGAGGTTGGTGTCTTTGAACAGATTCCCAGAGATGATGAAGGAGAGCCTCTGTATGAGGATTTCATCTGTAACGCTTGCTCCGAAGTGTGTTTCTTTCTAAAGTTATATCCTGGAGTGATATGGGCCTCAGGAAAGCAGCCCGGTGCTACTGTCGAAGTTAGCAAGGATAAAGGTGTTTTGGAAGATATGCCTCCAGTGGGTGATGCTTCTTCTTCTTTACATAATTCTTCTAAAACTGATGATGCAAAAGCTACTATTTCTGAATCTATTTCTGGTGGTAAGGATATGCTTCAGGGAGGAAATTGTGATAACAGTAAGGATTTAACCCAATGCACAAGCAGCACCAATATGTATGTTAACTGCCTCCTGGGTATTAACATTGTTGCTGCTTCCCCAGTTTTACATGGTAAACCAATGTTCCTTTCTAAAAATTGGAGAGATACTCTATGCAAATGTAACAATTGTTTGGAGTTTTACAATCAGAAACGGATTTCTTTTCTACTTGACAAGGAAGACTCAATTGCGGAATATGAGAGAATGGCCAAGCAAAAGAGGGAAGAAAAGTTGCAGGAAGCAGAGGGCGCTGAGGTAAACTTTTTTAATAAGCTTGGACACATAGAGAAAGTGGAGATTTTGAAGGGCATTGAAGAGATGAAGGATGGGCTTCGTACTTTCCTGGAGTCTGCAGATTCTTCAAAGCCAATTACTGAGGCTGATGTCCACCAGTTTTTTGATGACATCAAGAAAAAGCGTCGCCGTTTACAGTGA 1269 0.4208 MDGSFDDEAEPSVVTIKEYLDEVEERELAADLVLGGDDGKECTYSKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHEIVELWTKRNFRCDCGNSKFGEFYCKIFAGKVSENIENSYNHNFKGLYCTCGRPYPDPDAEEQVEMIQCCLCEDWFHEEHLGLESSDEVGVFEQIPRDDEGEPLYEDFICNACSEVCFFLKLYPGVIWASGKQPGATVEVSKDKGVLEDMPPVGDASSSLHNSSKTDDAKATISESISGGKDMLQGGNCDNSKDLTQCTSSTNMYVNCLLGINIVAASPVLHGKPMFLSKNWRDTLCKCNNCLEFYNQKRISFLLDKEDSIAEYERMAKQKREEKLQEAEGAEVNFFNKLGHIEKVEILKGIEEMKDGLRTFLESADSSKPITEADVHQFFDDIKKKRRRLQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0074 422 SUPERFAMILY FYVE/PHD zinc finger 115 203 IPR011011 -
Lal16g0074 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 196 IPR013083 -
Lal16g0074 422 ProSiteProfiles Zinc finger UBR-type profile. 40 110 IPR003126 GO:0008270
Lal16g0074 422 SMART PHD_3 128 194 IPR001965 -
Lal16g0074 422 SMART push_1 40 109 IPR003126 GO:0008270
Lal16g0074 422 Pfam Putative zinc finger in N-recognin (UBR box) 42 106 IPR003126 GO:0008270
Lal16g0074 422 Coils Coil 334 354 - -
Lal16g0074 422 CDD PHD_UBR7 128 193 - -
Lal16g0074 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR7 6 421 IPR040204 GO:0008270|GO:0061630
Lal16g0074 422 MobiDBLite consensus disorder prediction 223 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0074 Lal-Chr16 442331 446568 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0074 K11979 - gmx:100527913 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0074 16 442331 446568 Lal15g0056 15 399999 406449 LSH