Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0056 ATGAATAGTGAAATCCCTAAAGCAGAAGAAATGGATGGTTCATTTGAAGATGATTCAGCTGTTGTTACAATCGGCGAGTACCTTGATGAAGTTGAGCAGCGAGAGCTGGCAGCTGATTTAGTTCTGGGCGGTGATGATGGCAATGAATGTACCTATAGCAAAGGATACATGAAGAGGCAGGCAATTTTCTCTTGCCTAACCTGCACCCCAGATGGGAATGCTGGAGTTTGCACAGCTTGCTCATTGTCTTGCCATGATGGCCACCAGATCGTGGAACTATGGACAAAAAGAAACTTTAGGTGTGATTGTGGCAATTCAAAGTTTGGCGAACTCTACTGCAAAGTTTTTGCAGGCAAAGATGCAGAGAATGTTGAGAACTCATACAATCATAACTTCAAAGGTTTATATTGCACTTGTGGTCGCCCCTACCCAGACCCGGATGCTGTAGAACAAGGAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTCCATGAGGAGCATCTTGGTCTTGAGTCTTCTGATGAGTTTCCCAGAGATGATGAAGGAGAGCCTCTGTATGAGGATTTCATCTGTAAGGCATGCTCTGAGGTGTGTTTCTTTCTAAAATTATATCCTGAAGTAATACGGGCTTCCGGAAAGCAGCCAGATGCTACCGTCGAAGTTAGCAAGGGTAAAAGTGTTCTTGAAGCTATGCCTCCAATGAGTGAGGGTTCTTCACACAATTCTCCTAAAACTGATGATGCAAAAGCAACTATTTCTGAATCTATTTCTGGTGGTAAGGATCTGCTTCAGGGAGGAAATTGTCACAACAGTAAGGAATTAAGCCAATGCACAAGCAGCACCAATATGCTTGTTCGCTGCCTCCTTGGTGTTAACATTGTTTCTGCTTCCCCAGTTTTAGATGGTAAACCAATATTCCTTTCCAAAAACTGGAGAGATGCTCTATGCAAATGCAACAATTGTTTGGAGTTTTACAACCAGAAGCGGATTGCTTTTCTACTTGACAAGGAAGACTCAATTGTGGAATATGAGAAAATGGCCAAGCAGAAGAGAGAAGAAAAGTTGCAGGAAGCAGAGGGTACTGAGGTTAACTTCTTTAATAAGCTTGGGCACGTAGAGAAAGTGGAGATCTTGAATGGCATTGAAGAGATGAAGGACGGGCTTCGTACTTTCCTGGAATCTGCAGACTCATCAAAGCCAATTACTGAGGCTGATGTCCACCAGTTTTTTGAAGAAATTAAGAAAAAGCGTCGCCGTTTACAGTGA 1269 0.431 MNSEIPKAEEMDGSFEDDSAVVTIGEYLDEVEQRELAADLVLGGDDGNECTYSKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHQIVELWTKRNFRCDCGNSKFGELYCKVFAGKDAENVENSYNHNFKGLYCTCGRPYPDPDAVEQGEMIQCCLCEDWFHEEHLGLESSDEFPRDDEGEPLYEDFICKACSEVCFFLKLYPEVIRASGKQPDATVEVSKGKSVLEAMPPMSEGSSHNSPKTDDAKATISESISGGKDLLQGGNCHNSKELSQCTSSTNMLVRCLLGVNIVSASPVLDGKPIFLSKNWRDALCKCNNCLEFYNQKRIAFLLDKEDSIVEYEKMAKQKREEKLQEAEGTEVNFFNKLGHVEKVEILNGIEEMKDGLRTFLESADSSKPITEADVHQFFEEIKKKRRRLQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0056 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 198 IPR013083 -
Lal15g0056 422 ProSiteProfiles Zinc finger UBR-type profile. 48 118 IPR003126 GO:0008270
Lal15g0056 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR7 10 421 IPR040204 GO:0008270|GO:0061630
Lal15g0056 422 SMART push_1 48 117 IPR003126 GO:0008270
Lal15g0056 422 MobiDBLite consensus disorder prediction 236 250 - -
Lal15g0056 422 Pfam Putative zinc finger in N-recognin (UBR box) 50 114 IPR003126 GO:0008270
Lal15g0056 422 SMART PHD_3 136 196 IPR001965 -
Lal15g0056 422 Coils Coil 334 354 - -
Lal15g0056 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR7-RELATED 10 421 - -
Lal15g0056 422 MobiDBLite consensus disorder prediction 231 250 - -
Lal15g0056 422 CDD PHD_UBR7 136 195 - -
Lal15g0056 422 SUPERFAMILY FYVE/PHD zinc finger 123 204 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0056 Lal-Chr15 399999 406449 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0056 K11979 - gmx:100817441 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0056 15 399999 406449 Lal15g0056 15 399999 406449 ECH
Lal16g0074 16 442331 446568 Lal15g0056 15 399999 406449 LSH