Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0564 ATGTTTTGCAAATCTAGTTTCACCAATCTCTTGGACATGGATTATCACTATATTCTTGGAGGGGTTCTAGTTTCTAGTTTAACTGTTGTGTATGTTATATACAATTTTGCAAAAAATAAGGGTGCAAGTTCAAGATCAATACACTTATTAGAAAGCAATGAGTTTGGAAAGACATCAGAAAACGTAACATGCAATGAAGAGATTGATGGAATCACAGATATCATCATTGTAGGTGCTGGGGTTGCTGGTGCAGCCCTTGCTTACACACTTGGAAAGGATGGAAGGAGGGTGCATGTCTTTGAAAGGGACTTGAGTGAACCTGATAGGATTGTAGGTGAATATCTACAACCTGGAGGCTATCTGAAGTTACTTGAGTTAGGCCTTGAGGATTGTTTGGATGAAATTGATGCTCAAAAAGTTTTTGGTTATGCTCTTTCTAAGGATGGAAAAGATGCCATGCTATCTTATCCCCTAGAAAAGTTTAGCTCTGATGTTTCTGGTAGAGGCTTTCACAATGGCCGCTTCATACAAAGAATGAGAGAAAAGGCTGCATCTCTTCAGAATGTAAAATTAGAACATGGAACTGTCACATCTCTACTTAAAGAAAATGGAACCGTCAAAGGGGTGAACTACAAAACCAAGAGTGGCCAAGAGTTCACAGCAAAAGCTCCCCTCACCATAGTATGTGATGGTTGTTTTTCCAACTTGAGGCGTTTTCTTTGCAACCCTAAGGTTGAAGTACCCTCTCATTTTGTTGGTCTAGTCCTGGAGAATTGTAATCTTCCATATGCAAACTATGGACAGGTTATTGTAGATGATCCTTCACCCATTGTGTTTTATCCCATTAGCAGCATTGAGATTCGGTGTTTGGTAGATGTGCCTGGCCAAAAATTACCTTCCTTTGGCAATGGCGAAATGGCGCAGTATTTGAAAACTCTGGTAGCTCCCCAGGTTCCACCAGAGCTGTATAATTCTTTTAATGCAGCAGTTGATAAAGGAAACATCAGAACCATGTCAAATAGAAGCATGCCTGCCTCACCTTATCCCACACCTGGTGCCCTTCTAATGGGAGACGCCTTAAATATGCGTCACCCTGTAACAGGAGGAGGAATGACCGTGATTTTGTCTGACATTGTTGTGCTAAGGGATCTACTTAAACCTGTGCATGATTTGCATGATGCTTCTGCTCTTTGCAAATACCTTGAATCGTTCTATACCCTGCGCAAGCCAGTGGCATCTACAATAAACACATTAGCTGATGCCTTGTACAAGGTGTTTTGTGCATCACCTGATTCGGCTAGGAAGGAAATGCGCCAGGCATGTTTCGATTATTTGAGCCTTGGAGGTATTTTCTCAGATGGACCTACAGCTCTACTCTCTGGTCTAAATCCTAGTCCCTTGATCTTGGTTCTCCATTTCTTCGCGATGGCTGTTTACGGCGTCGGCCGCTTGTTGATACCATTTCCTTCTCCAAAGAAAATGTGGATCGGAGTTAGATTAATTTCAAGTGCATCAAGTATCATATTCCCTATTATCAAGGCTGAAGGAGTGAGACAAATGTTATTTCCAGCAACTGTGCCAGCATATTACAGAACACCTCCTGTCTATTAG 1611 0.4171 MFCKSSFTNLLDMDYHYILGGVLVSSLTVVYVIYNFAKNKGASSRSIHLLESNEFGKTSENVTCNEEIDGITDIIIVGAGVAGAALAYTLGKDGRRVHVFERDLSEPDRIVGEYLQPGGYLKLLELGLEDCLDEIDAQKVFGYALSKDGKDAMLSYPLEKFSSDVSGRGFHNGRFIQRMREKAASLQNVKLEHGTVTSLLKENGTVKGVNYKTKSGQEFTAKAPLTIVCDGCFSNLRRFLCNPKVEVPSHFVGLVLENCNLPYANYGQVIVDDPSPIVFYPISSIEIRCLVDVPGQKLPSFGNGEMAQYLKTLVAPQVPPELYNSFNAAVDKGNIRTMSNRSMPASPYPTPGALLMGDALNMRHPVTGGGMTVILSDIVVLRDLLKPVHDLHDASALCKYLESFYTLRKPVASTINTLADALYKVFCASPDSARKEMRQACFDYLSLGGIFSDGPTALLSGLNPSPLILVLHFFAMAVYGVGRLLIPFPSPKKMWIGVRLISSASSIIFPIIKAEGVRQMLFPATVPAYYRTPPVY 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0564 536 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 73 95 - -
Lal15g0564 536 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 222 237 - -
Lal15g0564 536 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 350 365 - -
Lal15g0564 536 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 365 381 - -
Lal15g0564 536 PANTHER SQUALENE MONOOXYGENASE 13 535 IPR040125 GO:0004506|GO:0016126
Lal15g0564 536 Pfam NAD(P)-binding Rossmann-like domain 76 102 - -
Lal15g0564 536 Gene3D - 70 454 IPR036188 -
Lal15g0564 536 Pfam Squalene epoxidase 222 494 IPR013698 GO:0004506|GO:0016021|GO:0050660
Lal15g0564 536 PANTHER SQUALENE MONOOXYGENASE-RELATED 13 535 - -
Lal15g0564 536 SUPERFAMILY FAD/NAD(P)-binding domain 72 447 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0564 Lal-Chr15 3905803 3909811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0564 58 534 Miscellaneous Gene Families AT1G58440 76.101 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0564 K00511 - gmx:100808856 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0564 15 3905803 3909811 Lal15g0564 15 3905803 3909811 ECH
Lal15g0564 15 3905803 3909811 Lal3g0052 3 308503 310901 PCT
Lal3g0052 3 308503 310901 Lal15g0564 15 3905803 3909811 PCT