Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1445 ATGCTTTCAAGTGTTGTGCCCATATTCCAAAGTAAAATTCAACAGAAACATTGCATTACAGTAGCACTATCAGACTCCAACACTTCAAAACCATGGTCTAGGACAACTCTAGAAAGAGTTAATTTTGCACTTGGCCAAAATAATATCTTCATGGCTGAGGGGCGATCAGTGATGGACCTTATTATTCAGTTCCTAAACATAGTAGCTCCTCCAATCACCTTCTTTTCCCTTTGCCTTTTCTTACCACCTTATTGGACTTTCAAGTTCTTCCTTTCCACCATCAACTCCATATTCAGTGAAAATATCTCTGGTAAAGTTGTTCACATTACAGGTGCTTCCTCTGGCATCGGTGAGATTGCACCCCTCAGAGTTAAATCAAATGGTGAAAGTAGTAGAGTACATTTGGCATACGAGTATGCTAGGAGAGGTGCAAGGTTAGCACTTTCTGCTAGGAGGGAAACTGCACTGAGGGAAGTTGCTGATAGAGCGCGTGATTATGGATCTCCTGATGTTATTATAATACGTGCTGATGTTTCCAAAGTTGATGATTGTAAGCGATTAGTGGATGAAACTTTAACTCATTTTGGAAGACTGGACCATCTGGTAAACAATGCCGCAATCAGTCTTGGTACCTTGTTTGAAGAAACAACTGATATCACCAACTTGAAACCTATCATGGAAACAAATTTTTGGGGATCAGTTTACACAACACGTTTTGCTTTACCACACCTCAGAAACAGCAGAGGCAAAATTGTGGTCATGTCCTCTGCTGATTCTTGGATGTCTGTACCAAGAAGGCATGTGTATAGTGCAAGCAAAGCAGCATTAGTGAGCCTATATGAAACATTGAGAGTGGAAGTTGGGTCAGACATAGGTATAACAATAGTGACACCTGGTTACATTGAATCTGAATTGACCAAAGGGAAGTTCTTAAAGGCAGAAGGCAAAATGGATGTGGACCAAGATTTGAGAGATGCTGAGGTGAGTGCAGTGCCTGTGGGATCAGCAAGTTGTTGTGCCAAAGCCATAGTTAATAGCACTTTGAGGGGAGATAGGTACCTGACTGTACCAGAATGGTTCAAAATAACCTATGTGATAAAAGTGATGTTCCCAGAGCTAGTAGAGTGGGGCTTCAGAATGCTGTATATGACTGCACCAGGAACTCATGCAAGGGAAGCCCCTAGTAAAAAGATTTTGGATACCACTGGACTCAAAAAGCTCTTTTATCCCTCTTCCATCCAATCTCCTGAGGTCAAGGTTGAGTGA 1266 0.4171 MLSSVVPIFQSKIQQKHCITVALSDSNTSKPWSRTTLERVNFALGQNNIFMAEGRSVMDLIIQFLNIVAPPITFFSLCLFLPPYWTFKFFLSTINSIFSENISGKVVHITGASSGIGEIAPLRVKSNGESSRVHLAYEYARRGARLALSARRETALREVADRARDYGSPDVIIIRADVSKVDDCKRLVDETLTHFGRLDHLVNNAAISLGTLFEETTDITNLKPIMETNFWGSVYTTRFALPHLRNSRGKIVVMSSADSWMSVPRRHVYSASKAALVSLYETLRVEVGSDIGITIVTPGYIESELTKGKFLKAEGKMDVDQDLRDAEVSAVPVGSASCCAKAIVNSTLRGDRYLTVPEWFKITYVIKVMFPELVEWGFRMLYMTAPGTHAREAPSKKILDTTGLKKLFYPSSIQSPEVKVE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1445 421 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 196 207 IPR002347 -
Lal14g1445 421 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 249 257 IPR002347 -
Lal14g1445 421 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 269 288 IPR002347 -
Lal14g1445 421 Gene3D - 92 385 - -
Lal14g1445 421 PRINTS Glucose/ribitol dehydrogenase family signature 106 123 IPR002347 -
Lal14g1445 421 PRINTS Glucose/ribitol dehydrogenase family signature 196 207 IPR002347 -
Lal14g1445 421 PRINTS Glucose/ribitol dehydrogenase family signature 243 259 IPR002347 -
Lal14g1445 421 PRINTS Glucose/ribitol dehydrogenase family signature 269 288 IPR002347 -
Lal14g1445 421 PRINTS Glucose/ribitol dehydrogenase family signature 289 306 IPR002347 -
Lal14g1445 421 PANTHER RETINOL DEHYDROGENASE-RELATED 58 413 - -
Lal14g1445 421 Pfam short chain dehydrogenase 105 309 IPR002347 -
Lal14g1445 421 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 256 284 IPR020904 GO:0016491
Lal14g1445 421 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 100 383 IPR036291 -
Lal14g1445 421 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 58 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1445 Lal-Chr14 15603755 15606212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1445 100 334 Acyl Lipid Metabolism Gene Families AT1G24360 26.582 4.47e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1445 K22418 - pvy:116105445 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1445 14 15603755 15606212 Lal14g1445 14 15603755 15606212 ECH
Lal14g1445 14 15603755 15606212 Lal7g0871 7 15254615 15257061 LSH