Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1429 ATGGCCATCGCTACCTTAAAATTAGTCTGCAAACCCAATCTTCATATTCGCCCCACTCCTTTCCAATGCATTCGCATGGTTGTTCCAAGATCCCTCGCTGTTGTTGAGGCTGCAGATCAATGTATCGCTTCAATTCCCGAACAGCAAGAAAATAAGAAGGTTCCGGGATGGAAGAAGTTGAATTCCAAAGAGCTTGGACTTAAGAATTCGATGATAGCAAGCCCTACTAAGAAGGTTCTAAACTTGCTCAAGAAAAAGGGGTATGATGTATACCTTGTAGGAGGTTGTGTACGGGATCTTATACTAAAGCAAACACCAAAGGACTTTGATATCATAACTTCAGCTGATCTTAGAGAGGTGATGAGAACATTTTCATGGTGTGAGATAGTTGGGAAAAGGTTTCCAATATGTCATGTTCATATGGATGGTATCGTTGTTGAGGTTTCAAGCTTTAATACTTCTAGATGCAAGCCGGCTATGTACTTCACTCATGATATTGAGGCACCTAGTGGCTGCGATAAAGATGACTATCTCCGTTGGAGGAATTGTTTGAAGCGGGACTTCACAATTAATGGGTTGATGTTTGATCCATATGCAAAAATTGTATATGATTACATGGGAGGAATTGAAGATATTATGAAAGCTAAAGTGCGAACTGTGGCTCCTGCAGCTGCTTCTTTTCAGGAGGATTGTGCTCGCATTCTACGTGCAATTAGAGTTGCTGCTCGCTTGGGGTTTAGTATTTCAAGGGAAACTGCTCATTCTATTAAAGATTTTTCTTCTTTAGTATTAAGACTAGATAAGGGTAGACTCCTGATGGAAATGAATTACATGCTTGCTTATGGATCCGGTGAAGCGTCATTGAGATTGCTATGGAAATTTGGACTTCTAGACATACTTCTTCCTTTTCAGGCTGCTTATTTTGTTCGCCATCGATTTCGGAGACGGGACAAAAGAACCAATATGCTTTTGTCTCTTTTCTCCAATTTGGATAGACTTTTGGCACCCAACCGTCCATGTCATAGTAGCTTATGGGTTGCTATCCTCGCATTACATAAAACATTGAGTGATCTGCCAAGGGATCCTTTGGTGGTGGCTGCATTTAGCCTTGCAGTTCATAATGGTGGAAATTTTTCGGAAGCAGTAGGCATAGCTAGGAGGATCGAGAAATCACATGATGTCAGATTTCCTGAATTATTAGATCCGTCAGGTCTGGATGCCGAGGCTTTGGCGGATGAGGTTCTGAATCTTGCAGAGTCTGTTAAGGGGACCCTGTCGCAGATGACAACTAGGTATTTGGTATCTCAGGCTATGGCTGACTATCCTCAAGCCCCTCATTCAGATATGGTGTTCATTCCATTAGGATTATTCATTAAAACTCTCAACATTTTTGAGGATGTGAAAGTGAGTTCCCGCAGGAAATTTTTGTCAAAGCATGGCAAAAAAATTGATTACGAGTCTTTAGCTCAAGGTGACCTTCAAGAAACAAGGCACGTGTTTGCAAGGGTTGTATTTGATACCGTATATCCTCTATATTGA 1539 0.4133 MAIATLKLVCKPNLHIRPTPFQCIRMVVPRSLAVVEAADQCIASIPEQQENKKVPGWKKLNSKELGLKNSMIASPTKKVLNLLKKKGYDVYLVGGCVRDLILKQTPKDFDIITSADLREVMRTFSWCEIVGKRFPICHVHMDGIVVEVSSFNTSRCKPAMYFTHDIEAPSGCDKDDYLRWRNCLKRDFTINGLMFDPYAKIVYDYMGGIEDIMKAKVRTVAPAAASFQEDCARILRAIRVAARLGFSISRETAHSIKDFSSLVLRLDKGRLLMEMNYMLAYGSGEASLRLLWKFGLLDILLPFQAAYFVRHRFRRRDKRTNMLLSLFSNLDRLLAPNRPCHSSLWVAILALHKTLSDLPRDPLVVAAFSLAVHNGGNFSEAVGIARRIEKSHDVRFPELLDPSGLDAEALADEVLNLAESVKGTLSQMTTRYLVSQAMADYPQAPHSDMVFIPLGLFIKTLNIFEDVKVSSRRKFLSKHGKKIDYESLAQGDLQETRHVFARVVFDTVYPLY 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1429 512 Pfam Poly A polymerase head domain 90 218 IPR002646 GO:0003723|GO:0006396|GO:0016779
Lal14g1429 512 Gene3D Beta Polymerase, domain 2 71 218 IPR043519 -
Lal14g1429 512 SUPERFAMILY Nucleotidyltransferase 65 213 IPR043519 -
Lal14g1429 512 SUPERFAMILY Poly A polymerase C-terminal region-like 217 354 - -
Lal14g1429 512 Pfam Probable RNA and SrmB- binding site of polymerase A 245 306 IPR032828 -
Lal14g1429 512 Gene3D - 219 387 - -
Lal14g1429 512 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 1 511 - -
Lal14g1429 512 CDD NT_ClassII-CCAase 87 212 IPR002646 GO:0003723|GO:0006396|GO:0016779
Lal14g1429 512 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE-RELATED 1 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1429 Lal-Chr14 15523981 15529942 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1429 - - gmx:100801072 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1429 14 15523981 15529942 Lal23g0281 23 2886732 2888276 LSH