Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1608 ATGGACAGGCTCATAAGGTTAGAGCCATCAAACATAGTCCCAATCAGGATTGAACAAGGTCAAAAATGCTATGGCAGGGTCACCTTATGCAATGTAATGTACACAATGCCTGTGGCCTTTAGGCTTCAACCACTAATCAAAACACATTACACTGTTAAGCCACAATCAGGTATCATATCACCTTTGTCCACAATCACTTTAGAAATAATCTATTATCTTCCATCTGGGTCTATTCTTCCTCACTCTTTTCCACACTCACAAGATTCTTTCCTTCTCCATAGTGTTATAGTTCCTGGTGCATTGATCAAAGGACCTTCATCAATGTTTGATGTTGTTCCTAGTGATTGGTTTACCACAAGGAAGAAGCAAGTTTTCATTGATAGTGGCATCAAAATCATTTTTTTGGGGTCACTTATTCTGGCTCAACTTATTCTACATGGTTCAATTGATGAAATAAGAGAAGTACTAGAAAGAAGTGATCCATCATGGAAATCTGTGGACTCGAAAAACCGCAACGGCGAAACATTACTTCACTTGGCTATTTCACAAGGAAGACCTCATCTTGTTCAATTGCTTCTTGAATTCAAGCCTGATTTAGAAGCTAGAAGTTGTTCTGGCTCGACCGCGCTCGAACTTGCATCTTCCTTAGGGGAATGCTTAATTGTTGAGCTTCTATTGGCTCATAGAGCCAACACAGAAAGATCAGAATCATTCATGTTTGGTCCAATCCATTATGCTGCAAGAAATGGTCACATAGAGATTCTAAGGCTTCTATTACTCAAAGGTGCAAAAGTAGATTCTCTCACAAAAGATGGCAACACTGCTTTGCACCTTGCAGTTGAAGAACATAGAAGAGACTGTGCTAGACTTCTATTATCAATTGGTGCGAGGATCGATATTCGAAACGCGGGAGAAGGTGATACCCCTTTGCATATAGCAGCATCCACAGGAGATGACAGCATAGTGAAGCTCTTATTGCAAAAGGGTGCTAACAAAGATGTGAGGAATAGACAAGGGAAGACAGCTTATGATTTTGCAGCCGAAAATGGCCATGTTAGGCTCTTCGACTCGCTTTGCTTGGGGGACAAGTTATGCATTGCAGCAAGGAAAAGAGAAGTAAGGACAGTCCTAAAGATTCTAGAGGGTGGTGCAGCTATCAATGGAAGGGATCAAAATGGATGGACTGCACTGCATAGAGCCTCATTCAAAGGGAGAATCGGCGTGGTTCGGGTTCTGTTGGAGAAAGGGATTGATTTTGATGCAAAAGATGAAGAAGGGTACACTGCATTGCATTGTGCATCTGAATCAGGACATGCAGATGTTACAGAGTTATTGGTGAAAAAAGGTGCAGATGTTGAAGCTAGAACAAGTAAAGGTGTGACTGCATTTCAAATAGCTGAGTCATTGCACTATGTTGGGATCACTAGGATACTTGTTCATGATGGGGCTAATAGGGAGAATGTGAACAATATACAAGCATCACATGTTGCAAGTCCATTTAGGAAGAAAATTGAAGCTAAGAGTTTGAAGAAGAACAAAATGGTTAGAACCATAGGGCTAAGTTAA 1566 0.4093 MDRLIRLEPSNIVPIRIEQGQKCYGRVTLCNVMYTMPVAFRLQPLIKTHYTVKPQSGIISPLSTITLEIIYYLPSGSILPHSFPHSQDSFLLHSVIVPGALIKGPSSMFDVVPSDWFTTRKKQVFIDSGIKIIFLGSLILAQLILHGSIDEIREVLERSDPSWKSVDSKNRNGETLLHLAISQGRPHLVQLLLEFKPDLEARSCSGSTALELASSLGECLIVELLLAHRANTERSESFMFGPIHYAARNGHIEILRLLLLKGAKVDSLTKDGNTALHLAVEEHRRDCARLLLSIGARIDIRNAGEGDTPLHIAASTGDDSIVKLLLQKGANKDVRNRQGKTAYDFAAENGHVRLFDSLCLGDKLCIAARKREVRTVLKILEGGAAINGRDQNGWTALHRASFKGRIGVVRVLLEKGIDFDAKDEEGYTALHCASESGHADVTELLVKKGADVEARTSKGVTAFQIAESLHYVGITRILVHDGANRENVNNIQASHVASPFRKKIEAKSLKKNKMVRTIGLS 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1608 521 ProSiteProfiles Ankyrin repeat region circular profile. 425 455 - -
Lal13g1608 521 SMART ANK_2a 458 490 IPR002110 GO:0005515
Lal13g1608 521 SMART ANK_2a 305 334 IPR002110 GO:0005515
Lal13g1608 521 SMART ANK_2a 238 267 IPR002110 GO:0005515
Lal13g1608 521 SMART ANK_2a 205 234 IPR002110 GO:0005515
Lal13g1608 521 SMART ANK_2a 338 368 IPR002110 GO:0005515
Lal13g1608 521 SMART ANK_2a 392 421 IPR002110 GO:0005515
Lal13g1608 521 SMART ANK_2a 271 300 IPR002110 GO:0005515
Lal13g1608 521 SMART ANK_2a 425 454 IPR002110 GO:0005515
Lal13g1608 521 SMART ANK_2a 172 201 IPR002110 GO:0005515
Lal13g1608 521 Gene3D - 360 502 IPR036770 -
Lal13g1608 521 Gene3D - 136 359 IPR036770 -
Lal13g1608 521 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Lal13g1608 521 Pfam Ankyrin repeats (many copies) 303 346 IPR002110 GO:0005515
Lal13g1608 521 ProSiteProfiles Ankyrin repeat region circular profile. 172 203 - -
Lal13g1608 521 ProSiteProfiles Ankyrin repeat region circular profile. 242 266 - -
Lal13g1608 521 PRINTS Ankyrin repeat signature 306 321 IPR002110 GO:0005515
Lal13g1608 521 PRINTS Ankyrin repeat signature 441 455 IPR002110 GO:0005515
Lal13g1608 521 ProSiteProfiles Ankyrin repeat profile. 242 270 IPR002110 GO:0005515
Lal13g1608 521 SUPERFAMILY PapD-like 2 148 IPR008962 -
Lal13g1608 521 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 512 - -
Lal13g1608 521 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Lal13g1608 521 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Lal13g1608 521 SUPERFAMILY Ankyrin repeat 165 492 IPR036770 -
Lal13g1608 521 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Lal13g1608 521 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 512 - -
Lal13g1608 521 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Lal13g1608 521 Gene3D Immunoglobulins 1 125 IPR013783 -
Lal13g1608 521 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Lal13g1608 521 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Lal13g1608 521 Pfam Ankyrin repeats (3 copies) 156 232 IPR002110 GO:0005515
Lal13g1608 521 Pfam Ankyrin repeats (3 copies) 242 302 IPR002110 GO:0005515
Lal13g1608 521 Pfam Ankyrin repeats (3 copies) 364 455 IPR002110 GO:0005515
Lal13g1608 521 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Lal13g1608 521 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Lal13g1608 521 ProSiteProfiles Ankyrin repeat region circular profile. 305 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1608 Lal-Chr13 15882342 15883907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1608 157 487 Miscellaneous Gene Families AT3G09550 28.488 7.89e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1608 - - gmx:100782444 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0466 10 10979393 10980943 Lal13g1608 13 15882342 15883907 PCT
Lal13g1608 13 15882342 15883907 Lal10g0466 10 10979393 10980943 PCT