Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0466 ATGGACAGGCTAATAAGATTAGACCCATCAAACATAGTCCCAATAAGGGTCGAACCAGGTCAGAAATGTTACGGTCAGATAACACTACGCAACGTTATGTACACAATGCCAGTGGCTTTCAGGCTTCAGCCACTGATCAAGACTCGTTACATGGTAAAGCCACAATCAGGGATCATATCCCCTTTAGCCACAATCACGGTCGAGATAGTTTATCATCTCCCATCTGGGTCCACTCTCCCTCACTCTTTCCCTCACTCTGAGGACACTTTCCTCCTCCACAGCGTGGTAGTTCCCGGTGCAACAATGAAAGAACCTTCATGGATGTTCGACGCTGTTCCGAGTGATTGGTTCACCACCAAAAGGAAGCAAGTTTTCATTGATAGTGGCATCAAAATCATGTTTGTAGGGTCACCCATTTTGTCTCAACTCATTGCAGATGGTTCTATTGATGGAATAAGAGAAGTGCTTGAATGCAGTGACCCATCATGGAAAGCTATTGACTCCATAGATCAACAAGGTCATACACTACTTCACTTGGCTATTTCACAAAGAAGGCCAGACCTAGTTCAGTTACTCCTAGAGTTCAAACCAGAGATAGAAGCACCAAGCCAAACTGGCTCAACACCACTTGAGGTTGCATCTTCCTTAGGAGAAGCCTTAATAGTTGAACTTCTGTTGGCACACAAGGCCACTACAGAAAGATCAGAGTCATCAACATTTGGATCAATTCACCTAGCATCAAGAGAAGGACATGTTGATGTTCTGAGGCTTCTCTTACTCAAAGGTGCTAAAGTTGATTCTCTCACAAAAGATGGCAACACAGCTTTACACCTTGCAGTTGAACAACACAGAAGAGGTTGTGCTAAACTACTATTAGCTAATGGTGCCAGAACCCATATTCGTAACACCAGAGAAGGAAATACCCCTCTGCACATAGCAGCAGCTATTGGTGACGAAAAAATGGTCAAGCTCTTGCTCCAAAAGGGTGCCAACAAAGATGTGAGAAACAAGTTGAATAAGACTGCATATGATGTTGCAGAAGAGAATGAACACAAGCACATTTTCGATGCGCTGAGGTTCGGGGATAATCTGTGTGTTGCAGCGAGAAAAGGTGAAGTGAGGATGATACATAAGTTGCTTGAGAGTGGTGCAGCCATCAATGGGAGAGACCAACATGGTTGGACAGCACTGCATAGAGCCAGCTTCAAAGGGAGAATAGATGCAGTTCGTGCTCTTATGGAGAAAGGGATTGATTTGGATGCAAAAGATGAAGATGGTTACACTGCATTGCACTGTGCTGTGGAATCTGGAAATGCTGATGTGACTGAAGTGTTGGTTAAAAAGGGTGTAAATGTTGGAGCAAGAACCAATAAGGGTGTCACTGCATTGAAGATAGCAGAATCATTGCGCTATGTTGGGATTGTAAGGATACTCATCAATGGTGGGGCTAGTAGGGACAATATGGATCAAATATCAGAGACTGAATCAATAGTTATTCCATCTGGGAGTAAAATGGAAAGTAGGGCTATAGGGGTAAGAAGAAGAAGATAA 1551 0.4358 MDRLIRLDPSNIVPIRVEPGQKCYGQITLRNVMYTMPVAFRLQPLIKTRYMVKPQSGIISPLATITVEIVYHLPSGSTLPHSFPHSEDTFLLHSVVVPGATMKEPSWMFDAVPSDWFTTKRKQVFIDSGIKIMFVGSPILSQLIADGSIDGIREVLECSDPSWKAIDSIDQQGHTLLHLAISQRRPDLVQLLLEFKPEIEAPSQTGSTPLEVASSLGEALIVELLLAHKATTERSESSTFGSIHLASREGHVDVLRLLLLKGAKVDSLTKDGNTALHLAVEQHRRGCAKLLLANGARTHIRNTREGNTPLHIAAAIGDEKMVKLLLQKGANKDVRNKLNKTAYDVAEENEHKHIFDALRFGDNLCVAARKGEVRMIHKLLESGAAINGRDQHGWTALHRASFKGRIDAVRALMEKGIDLDAKDEDGYTALHCAVESGNADVTEVLVKKGVNVGARTNKGVTALKIAESLRYVGIVRILINGGASRDNMDQISETESIVIPSGSKMESRAIGVRRRR 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0466 516 PRINTS Ankyrin repeat signature 306 321 IPR002110 GO:0005515
Lal10g0466 516 PRINTS Ankyrin repeat signature 408 422 IPR002110 GO:0005515
Lal10g0466 516 ProSiteProfiles Ankyrin repeat region circular profile. 305 337 - -
Lal10g0466 516 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Lal10g0466 516 Gene3D - 363 429 IPR036770 -
Lal10g0466 516 Gene3D Immunoglobulins 1 124 IPR013783 -
Lal10g0466 516 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Lal10g0466 516 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 510 - -
Lal10g0466 516 Pfam MSP (Major sperm protein) domain 5 104 IPR000535 -
Lal10g0466 516 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Lal10g0466 516 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Lal10g0466 516 ProSiteProfiles Ankyrin repeat region circular profile. 172 194 - -
Lal10g0466 516 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Lal10g0466 516 SMART ANK_2a 359 388 IPR002110 GO:0005515
Lal10g0466 516 SMART ANK_2a 425 454 IPR002110 GO:0005515
Lal10g0466 516 SMART ANK_2a 205 234 IPR002110 GO:0005515
Lal10g0466 516 SMART ANK_2a 172 201 IPR002110 GO:0005515
Lal10g0466 516 SMART ANK_2a 305 334 IPR002110 GO:0005515
Lal10g0466 516 SMART ANK_2a 271 300 IPR002110 GO:0005515
Lal10g0466 516 SMART ANK_2a 238 267 IPR002110 GO:0005515
Lal10g0466 516 SMART ANK_2a 392 421 IPR002110 GO:0005515
Lal10g0466 516 SMART ANK_2a 458 487 IPR002110 GO:0005515
Lal10g0466 516 ProSiteProfiles Ankyrin repeat region circular profile. 425 457 - -
Lal10g0466 516 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Lal10g0466 516 ProSiteProfiles Ankyrin repeat profile. 458 490 IPR002110 GO:0005515
Lal10g0466 516 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 510 - -
Lal10g0466 516 Gene3D - 125 362 IPR036770 -
Lal10g0466 516 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Lal10g0466 516 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Lal10g0466 516 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Lal10g0466 516 Gene3D - 430 480 IPR036770 -
Lal10g0466 516 Pfam Ankyrin repeats (3 copies) 159 230 IPR002110 GO:0005515
Lal10g0466 516 Pfam Ankyrin repeats (3 copies) 243 336 IPR002110 GO:0005515
Lal10g0466 516 SUPERFAMILY Ankyrin repeat 166 492 IPR036770 -
Lal10g0466 516 ProSiteProfiles Ankyrin repeat region circular profile. 238 266 - -
Lal10g0466 516 SUPERFAMILY PapD-like 2 150 IPR008962 -
Lal10g0466 516 Pfam Ankyrin repeats (many copies) 403 446 IPR002110 GO:0005515
Lal10g0466 516 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Lal10g0466 516 ProSiteProfiles Ankyrin repeat profile. 364 391 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0466 Lal-Chr10 10979393 10980943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0466 147 347 Miscellaneous Gene Families AT3G09550 36.538 1.53e-22 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0466 - - jre:108997887 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0466 10 10979393 10980943 Lal13g1608 13 15882342 15883907 PCT
Lal13g1608 13 15882342 15883907 Lal10g0466 10 10979393 10980943 PCT