Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0373 ATGGCTTCTTCTCTCTTATTACCACTCTCTACCCCTTCTGCATCTTTCTATCTCTTCGATAATTCTGCTGCCAAATCTTCTTTCCTTCAAAGTACCACAAAGTTCTTTCCTTCTTTTCCCAAATCCACGACCAAAGTGTCATTCAGGTGCTTCAACTCTCCTTCTGCCAAATCCTCCTTCGACCATATCCCTAAGCAGTTCAGGAAGGATAATCTCAAGGATGGAATGATGGACAACTACAAGAATGCACCTCAATATCTATATGGCCTCAGTCCTTCACAAATGGACATGTTCATGACAGAGGACAACCCTATCCGTCAACAGACTGAAAGAGTTACAGAGGAGAGCATCTCATCTGCCAAGAATTATTTGGATCATGGTGGCATGTGGTCTAATTCTTGCATGGTCAATAATGGTCCTTCAAAATACAGTATGAGTGTTAGTATGTATCGAGGAGGAGGTAGGGGAGCTGGAAGGCCAAGAACTGCTCCACCAGATCTGCCTTCTTTGCTCTTGGATGCTCGTATATGCTATCTGGGTATGCCGATTGTACCAGCTGTGGCAGAGCTTCTTGTTGCTCAATTTATGTGGTTGGATTATGATAACCCTAAAAAACCTATATACTTATATATTAATTCATCTGGCACTCAGAATGAGAAGAATGAGACCGTGGGATCAGAAACTGAGGCATATTCCATAGCTGATATGATGTCTTATGTCAAATCGGATGTCTACACTGTGAATTGTGGCATGGCATATGGTCAAGCAGCAATGCTCCTGTCACTTGGAACAAAGGGTTATCGTGCTGTACAGCCAAATTCATCAACAAAATTGTATCTCCCAAAAGTCAACAGATCAAGTGGTGCTGTTATAGATATGTGGATTAAGGCAAAAGAGCTGGAGGCAAATACTGAGTATTACGTTGAGCTGTTAGCAAAAGGAATAGGGAAATCAAAAGAAGAAATTGCTAAAGATGTCCAGAGGCCTAAATATTTTCAAGCACAGGAAGCCATAGAGTATGGTGTTGCCGACAAAATCATTGATTCAAGGGATGCTACATTTGATAAGCGGAATTATGATGAAATGGTTGCTCAATCAAGAGCTACAAGGAGACAAGCTGGTGGCAATCCTCAAGTTGCTCCTTCAGGATTTAGAGCCGGACGATTAAAAGAAGCAGGGATGAGATTACAAGACATGCCTATGAAACGGAATGTAGTTTTAAGAGCATCACATCAGATCATACTAGTGAATGCAATGGTGGTCTGCAAATGTCGCAAGGCTACTAAATTGTATTGTTTCGTGCACAAAGTTCCTGTCTGTGGAGAATGTATCTGCTTCCCAGATCACCAAATCTGCGTGATCCGTACTTATTCGGAATGGGTTATAGATGGCGAGTATGATTGGCCCCCTAAGTGCTGCAATTGCCAATCTGTTTTAGAAGAGGGGAGTGGATCTCAAACTACCCGACTGGGTTGCTTGCATGTAATCCACACAAGTTGTTTGGTCTCACATATCAAGAGTTTTCCTCCACATACTGCTCCAGCAGGATATGTGTGTCCTTCATGTTCGACACCAATATGGCCTCCCAAAAGTGTGAAAGATTCAAGCTCTCGTCTTCATTCCAAGTTGAAGGAAGCTATCATTCAGACTGGTATGGAAAAGAATCTCTTTGGAAATCATCCAGTTTCATTGCCAGTGACGGAATCCCATGGTCCTCCACCTGCTTTTGCTTCCGACCCGTTGATTGGTAGGGAAAATCATGGAAACTCAGACTCAGTAGATGGGTTCTCACCTGCAACTGGATCAGATCCTTCTAAATTATCAGTGACAGATATTGTGGAGGTAGATGGTCCTAATTCTGCAGGAAATTTCATGAGAGGCTCAAGTCCTGTTGGTCCTGGTGCTACCACAAGGAAGAGCCCGATCTATGTTGAACGACAGAATTCTGAAATCTCATATTATGCTGATGATGAAGATGCAAATCGTAAAAAGTATACAAGAAGAGAAGTTGGAAAATGCTTACCTTCTGATGACATGCCTGCTGCTGTTCACGTAGGCTTAAGGCTTCCACTGCTCTTGCATGCTGAGGCTTGTCTAGTTCATTTATTAATTCAAATTTGCATCTTTGAAAATGCAGGTCCATTCCGGCATAAGTTTCTTAGAGCATTGCTACCATTCTGGTCCAGTGCTTTACCTACTCTACCAGTGACTGCACCTCCAAGAAAAGATGCAACAAACGCAGCTGAAGCCTCAGAAGGCCGTACACGGCATCAAAGATCATCAAGGATGGATCCAAGAAAAATTCTTCTACTCATTGCAATTATGGCGTGCATGGCAACTATGGGTATATTGTATTACAGACTAGTGCAACGAGGTCCAGGGGAAGAGTTTTCTAGTGATGAACAAATTTGA 2412 0.4258 MASSLLLPLSTPSASFYLFDNSAAKSSFLQSTTKFFPSFPKSTTKVSFRCFNSPSAKSSFDHIPKQFRKDNLKDGMMDNYKNAPQYLYGLSPSQMDMFMTEDNPIRQQTERVTEESISSAKNYLDHGGMWSNSCMVNNGPSKYSMSVSMYRGGGRGAGRPRTAPPDLPSLLLDARICYLGMPIVPAVAELLVAQFMWLDYDNPKKPIYLYINSSGTQNEKNETVGSETEAYSIADMMSYVKSDVYTVNCGMAYGQAAMLLSLGTKGYRAVQPNSSTKLYLPKVNRSSGAVIDMWIKAKELEANTEYYVELLAKGIGKSKEEIAKDVQRPKYFQAQEAIEYGVADKIIDSRDATFDKRNYDEMVAQSRATRRQAGGNPQVAPSGFRAGRLKEAGMRLQDMPMKRNVVLRASHQIILVNAMVVCKCRKATKLYCFVHKVPVCGECICFPDHQICVIRTYSEWVIDGEYDWPPKCCNCQSVLEEGSGSQTTRLGCLHVIHTSCLVSHIKSFPPHTAPAGYVCPSCSTPIWPPKSVKDSSSRLHSKLKEAIIQTGMEKNLFGNHPVSLPVTESHGPPPAFASDPLIGRENHGNSDSVDGFSPATGSDPSKLSVTDIVEVDGPNSAGNFMRGSSPVGPGATTRKSPIYVERQNSEISYYADDEDANRKKYTRREVGKCLPSDDMPAAVHVGLRLPLLLHAEACLVHLLIQICIFENAGPFRHKFLRALLPFWSSALPTLPVTAPPRKDATNAAEASEGRTRHQRSSRMDPRKILLLIAIMACMATMGILYYRLVQRGPGEEFSSDEQI 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0373 803 MobiDBLite consensus disorder prediction 737 761 - -
Lal13g0373 803 MobiDBLite consensus disorder prediction 618 638 - -
Lal13g0373 803 PRINTS Clp protease catalytic subunit P signature 166 181 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal13g0373 803 PRINTS Clp protease catalytic subunit P signature 206 226 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal13g0373 803 PRINTS Clp protease catalytic subunit P signature 246 263 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal13g0373 803 PRINTS Clp protease catalytic subunit P signature 325 344 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal13g0373 803 SUPERFAMILY RING/U-box 471 529 - -
Lal13g0373 803 CDD S14_ClpP_2 166 346 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal13g0373 803 SUPERFAMILY ClpP/crotonase 161 352 IPR029045 -
Lal13g0373 803 CDD Bbox2 425 450 - -
Lal13g0373 803 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 52 377 - -
Lal13g0373 803 MobiDBLite consensus disorder prediction 747 761 - -
Lal13g0373 803 Pfam Clp protease 169 349 IPR023562 -
Lal13g0373 803 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 52 377 IPR023562 -
Lal13g0373 803 ProSiteProfiles Zinc finger RING-type profile. 472 523 IPR001841 -
Lal13g0373 803 Gene3D - 155 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0373 Lal-Chr13 2341854 2351714 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0373 K01358 - gmx:100775639 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0373 13 2341854 2351714 Lal13g0373 13 2341854 2351714 ECH
Lal12g0384 12 2719732 2731671 Lal13g0373 13 2341854 2351714 LSH