Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0384 ATGGCCTCTTCTCTCTTATTACCACTCTCTACCCCTTCTTCACCCTTCACTTTCATCGATAATTCTGCTTCCAAATCCTCCTTCTTTCATGGAACAACGAAGCTCTTTCCGTCTTTCCCCAAAGCCACGAACAAAGTGACACGCAGGTGCTTCAAATCTCCTTATGCTAAATCCTCCTTCGACCATATCCCTAATCAGTTCAGAAAGGAAAATCTCAGGGATGGATTGATGGACAACTACAAGAATATACCTAAATATCTATATGGCCTCAGTCCTTCACAAATGGACATGTTCTTGACGGAGGACAACCCAATCCGTCAGCAGTCTGAAAGAGTTACAGAGGAGAGCATCTCATCTGCCAAGAATTATTTAGATCACGGTGGTATGTGGAGTCACTCTAGCATGGTTAATAATGGCCCTTCAAAATACAGCATGAGTGTTAGTATGTATCGAGGAGGAGGTAGAGGAGCTGGAAGGCCAAGAACTGCTCCACCAGATCTGCCTTCTTTGCTCTTGGATGCTCGTATATGCTATCTCGGTATGCCGATTGTACCAGCTGTGGCAGAGCTTCTTGTTGCTCAATTTATGTGGTTGGATTATGATAACCCTAAAAAACCTATATACTTATATATTAATTCATCTGGCACTCAGAATGAGAAGAATGAGACTGTGGGATCAGAAACTGAGGCATATTCCATAGCTGATATGATGTCTTATGTCAAATCCGATGTCTATACTGTGAACTGCGGCATGGCATATGGTCAAGCAGCAATGCTTCTGTCACTTGGAACAAAGGGTTATCGCGCTGTACAGCCAAATTCATCAACAAAGTTGTATCTCCCAAAAGTCAATAGGTCAAGTGGTGCTGTTATAGATATGTGGATTAAGGCCAAAGAGCTAGAGGCAAATACTGAGTATTATGTTGAGCTGTTAGCAAAAGGAATAGGAAAATCAAAAGAAGAAATTGCTAAAGATGTCCAGAGGCCTAAATATTTCCAAGCACAGGAAGCCATAGAGTACGGCATTGCTGACAAAATCATTGATTCAAGGGATGCTACATTTGACAAGCGGAATTATGATGAAATGCTTTCTCAATCAAGAGCTACAAGGAGACAAGCTGGTGGCAATCCTCAAGTTGCTCCTTCAGGATTTAGTCAAATTAATCAACCTGATTTGGCCACATGGAATACCATGTTGGCTGCTTATACAAACTCTTCTGATTCTGATATGTCCTTAGAGGCATTGCATTTATTCAATCACATGCGGTTGGGTTCTCAAATAAGGCCTAATGAAGTTACACTTGTGGCATTGATTACTGCATGTTCTAATTTAAGTGCTCTTCCTCAAGGTGCTTGGTTGCATTGTTATGTGCTAAGGAATAATCTTAAGCTGAATCGTTTTGTGGGTACTGCGTTGGTTGATATGTACTCCAAATGTGGTTCTTTGAATCTTGCGTATCAGTTGTTTGACGAATTGTCTGAGAGAGATACATTTTGCTACAATGCCATGATTGGGGGTTTTGCAATTAATGGTCATGGGCATGAAGCACTTGAGCTTTATAGAAATATGAAACTCGAGGGATTACTTCCTGATGCTGCAACTTTTGTGGTTACTATGTTCGCGTGCTCTCATGTTGGGTTTGTAGAGGAGGGTTTGCAGATTTTCGATACCATTAAGAAGGTTCATGGCATGGAACCAACACTTGACCATTATGGATGCCTAATTGATGTTTTGTGTCGAGCCGGGCAATTAAAAGAAGCAGAGGAGAGGTTACGAGAAATGCCCATGAAACCGAACGCTGTTTTGTGGAGGTCGTTACTTGGAGCAGCAAGATTACATAGGAACATAAATATAGGAGAAGTTGCTCTAAAACACTTAATAGAGCTAGAACCAGAAAGTAGTGGAAACTATGTGCTATTGTCTAACATGTATGCTAGCATTGGTAGGTGGAATGATGTGAAAAGAGTGAGGATGATGATGAAAGAACATGGCGTTAAAAAGTTACCAGGATCTAGCTTAGTGGAGATTAATGGTACCATGCATGAGTTTCTCACATGTGATAAAACTCATCCATATTGTAAAGAAATATATTCGAAGATCGTCGAAATAAATCGAAGACTACGAGATTATGGTTACAAGGCAAGAACATCAGATGTTATGTTGGATGTAGAAGAAGAGGATAAGGAAGGTGTCTTGTCTTATCACAGTGAAAGGCTTGCTATAGCATTTGCTCTTATAGCATCTGCTTCAACTTTGCCTATAAGAATTATAAAAAATCTTCGTGTTTGTGGGGATTGTCATGATATTACAAAGTTAATATCTGCTGCATATCAAAGAGATATTATAGTTAGAGATCGAAATAGGCTACGAAGTTGTATTGCTTCGTGCACAAAGTTCCTGTCTGTGGAGAATGTATCTGCTTCCCTGAGCACCAAATTTATCCGGACATATTCAGAATGGGTTATAGATGGCGAGTATGATTGGCCCCCTAAATGCTGTAAATGCCAAGCTGTTTTAGAAGAGGGGACTGGATCTCAAACTACCCGACTGGGTTGCTTGCATGTAATCCACACAAATTGCTTGGTCTCGCATATCAAGGATTTTCCTCCACATACTGCTCCAGCAGGATACGTGTGTCCTTCATGTTCAACCCCGATATGGCCTCCCAAAAGTGTGAAAGACTCAGGCTCTCGTCTTCATTCCAAATTGAAGGAAGTTATCATGCAGACTGGTATGGAAAAGAATCTCTTTGGAAATCATCCAGTTTCGCTGTCAGTGACAGAGTCCCGTGGGCCTCCACCTGCTTTTGCTTCTGATCCCTTGATTGGTAGGGAAAATCATGGAAACTCAGATTCACTAGATGGGTACTCACCTGCAACTGGATCAGAAGCTTCAAAACTTTCAGCGACAGATATTGTGGAGATAGATGGTTCCAATTCAGCAGGAAATTTTGTGAGAGGCTCAAGTCCTGTTGGTCCTGGTGCTACCACAAGGAAGGGCCCGGTTTATGTTGAACGACAGAATTCGGAAATCTCATATTATGCTGATGATGAAGATGCGAATCGTAAAAAGTATACAAGAAGAGGTCCATTCCGCCATAAGTTTCTCCGAGCATTGCTTCCATTCTGGTCCAGCGCTTTACCTACTCTACCAGTGTCTGCACCTCCAAAAAAAGATGCAGCAAACGCAGCTGAAGCCTCAGAAGGCCGTACCCGGCATCAAAGATCATCAAGGATGGACCCAAGAAAAATTCTTCTCCTGATTGCAATTATGGCGTGCATGGCAACTATGGGTATATTGTATTACAGACTAGCGCAACGGGGTCCAGGGGAAGAGGTTTCAAGTGATGAACAAATTTGA 3360 0.4179 MASSLLLPLSTPSSPFTFIDNSASKSSFFHGTTKLFPSFPKATNKVTRRCFKSPYAKSSFDHIPNQFRKENLRDGLMDNYKNIPKYLYGLSPSQMDMFLTEDNPIRQQSERVTEESISSAKNYLDHGGMWSHSSMVNNGPSKYSMSVSMYRGGGRGAGRPRTAPPDLPSLLLDARICYLGMPIVPAVAELLVAQFMWLDYDNPKKPIYLYINSSGTQNEKNETVGSETEAYSIADMMSYVKSDVYTVNCGMAYGQAAMLLSLGTKGYRAVQPNSSTKLYLPKVNRSSGAVIDMWIKAKELEANTEYYVELLAKGIGKSKEEIAKDVQRPKYFQAQEAIEYGIADKIIDSRDATFDKRNYDEMLSQSRATRRQAGGNPQVAPSGFSQINQPDLATWNTMLAAYTNSSDSDMSLEALHLFNHMRLGSQIRPNEVTLVALITACSNLSALPQGAWLHCYVLRNNLKLNRFVGTALVDMYSKCGSLNLAYQLFDELSERDTFCYNAMIGGFAINGHGHEALELYRNMKLEGLLPDAATFVVTMFACSHVGFVEEGLQIFDTIKKVHGMEPTLDHYGCLIDVLCRAGQLKEAEERLREMPMKPNAVLWRSLLGAARLHRNINIGEVALKHLIELEPESSGNYVLLSNMYASIGRWNDVKRVRMMMKEHGVKKLPGSSLVEINGTMHEFLTCDKTHPYCKEIYSKIVEINRRLRDYGYKARTSDVMLDVEEEDKEGVLSYHSERLAIAFALIASASTLPIRIIKNLRVCGDCHDITKLISAAYQRDIIVRDRNRLRSCIASCTKFLSVENVSASLSTKFIRTYSEWVIDGEYDWPPKCCKCQAVLEEGTGSQTTRLGCLHVIHTNCLVSHIKDFPPHTAPAGYVCPSCSTPIWPPKSVKDSGSRLHSKLKEVIMQTGMEKNLFGNHPVSLSVTESRGPPPAFASDPLIGRENHGNSDSLDGYSPATGSEASKLSATDIVEIDGSNSAGNFVRGSSPVGPGATTRKGPVYVERQNSEISYYADDEDANRKKYTRRGPFRHKFLRALLPFWSSALPTLPVSAPPKKDAANAAEASEGRTRHQRSSRMDPRKILLLIAIMACMATMGILYYRLAQRGPGEEVSSDEQI 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0384 1119 MobiDBLite consensus disorder prediction 926 965 - -
Lal12g0384 1119 ProSiteProfiles Zinc finger RING-type profile. 832 883 IPR001841 -
Lal12g0384 1119 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 383 777 - -
Lal12g0384 1119 Gene3D - 155 354 - -
Lal12g0384 1119 Gene3D Tetratricopeptide repeat domain 410 536 IPR011990 GO:0005515
Lal12g0384 1119 MobiDBLite consensus disorder prediction 1063 1078 - -
Lal12g0384 1119 CDD S14_ClpP_2 166 346 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal12g0384 1119 MobiDBLite consensus disorder prediction 1053 1078 - -
Lal12g0384 1119 Pfam DYW family of nucleic acid deaminases 711 796 IPR032867 GO:0008270
Lal12g0384 1119 TIGRFAM PPR: pentatricopeptide repeat domain 498 532 IPR002885 -
Lal12g0384 1119 TIGRFAM PPR: pentatricopeptide repeat domain 571 594 IPR002885 -
Lal12g0384 1119 Gene3D Tetratricopeptide repeat domain 537 671 IPR011990 GO:0005515
Lal12g0384 1119 Pfam E motif 613 675 IPR046848 -
Lal12g0384 1119 Pfam PPR repeat 563 594 IPR002885 -
Lal12g0384 1119 PRINTS Clp protease catalytic subunit P signature 166 181 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal12g0384 1119 PRINTS Clp protease catalytic subunit P signature 206 226 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal12g0384 1119 PRINTS Clp protease catalytic subunit P signature 246 263 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal12g0384 1119 PRINTS Clp protease catalytic subunit P signature 325 344 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lal12g0384 1119 SUPERFAMILY ClpP/crotonase 161 352 IPR029045 -
Lal12g0384 1119 Pfam PPR repeat family 496 542 IPR002885 -
Lal12g0384 1119 MobiDBLite consensus disorder prediction 950 965 - -
Lal12g0384 1119 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 567 597 IPR002885 -
Lal12g0384 1119 PANTHER OS12G0128200 PROTEIN 383 777 - -
Lal12g0384 1119 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Lal12g0384 1119 Pfam Clp protease 169 349 IPR023562 -
Lal12g0384 1119 Pfam PPR repeat 470 495 IPR002885 -
Lal12g0384 1119 SUPERFAMILY RING/U-box 815 893 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0384 Lal-Chr12 2719732 2731671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0384 380 789 Glycoside Hydrolase AT3G49170 34.783 2.00e-83 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0384 K01358 - gmx:100804311 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0384 12 2719732 2731671 Lal12g0384 12 2719732 2731671 ECH
Lal12g0384 12 2719732 2731671 Lal13g0373 13 2341854 2351714 LSH