Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0239 ATGGGAGTTCAACAACATGATGGACTTTCTGAAGACAATAAGCCTGCTGGAGATGCTTGTGTCAGTAGTTCTGTCAACCAACAGGGTCCTGTGAGTGTCTCTGATGTTTGCAATCCAAGTGAAGATACTGAAAGTGGTGCAGTTAATGAACCTAGTGGTGTTTCTTGTAAGAACAGTAATACATCGCATTTCTACAGACAAGATGCTGTGAGGAATACTACAAGTGGACTGATTGGGATTGTGACAGAGGTTGCTGGTGATTCGGATTCAGATAGCAGCATTACTGATGATGAGGATGATAGTGAAGATGAGGATGCTGATTCTGAGGAAGAAAATGGTGATGACAGTAACAATGATAGTAGAAATTGTGATCAGAATAGTGCTGATGGGGATTGTAAAACTGGTGCTCTTCTGGCTGACCAGATGCGTGTACTCTGGATTAACGAATCTGAATCTACCCAAAATTTCGATGACGTAGAAGTTGTTGATCGAGGATTTTTACATGGGGATTTTGTTGCTGCAGCTTCAGACCCTACTGGGCAAGTGGGTGTGGTGGTTGATGTAAATATATCTGTGGATCTGTTGGCTCCTGGTGGATCTATAATAAAAGATATCTCATCAAAAAGCTTAAAGCGTATTAGGGATTTCACAATTGGTGATTATGTCGTGCTTGGGCCTTGGTTAGGCAGAATTGATGATGTTTTAGATAATGTGACCGTCTTATTTGATGATGGTTCAGTGTGTAAACTCACCAAAGCAGATCCATTGAATCTTCAACCTGTTTCTAAGAATATCCTTGAAGATGGGCATTTCCTTTATTACCCAGGGCAACGTGTAAGGGCTAGCTCTTCATCAGTTTTCAAGAATTCAAGATGGCTGTCTGGCTTGTGGAAAGCTAATAGATTGGAAGGTACTGTCACTAATGTTACTGTAGGATCAGTGTTTGTTCGTTGGATATCATCTGCAGGTTATGGGCCCTATTCTTCTAGTTCTCCAGCTGAAGAGCAGAGCCCAAAAGACTTAAAATTATTGTCTTGTTTTGCTCATGCAAATTGGCAATTGGGTGACTGGTGTCTCTTACCTTCATCAGCACCGTCATCATCAATTTCCTTGGACAAAGGCATATCAAAATTAGAACTTAATGATTCTGTTAAGAATGAATTAGACTCTAATCACAAAGGAAGTGTGTGTGATTCAGAAGAAGTTACAATTGAAGAATTAAATGGGAATATGGATCTTATGGACCATGATCCAGTGGATGCTTTGGAAGAAAATGATAGAAATATTGGAAGTAATCCTTCACGCGATTCTAGCTCATGTGGTAGTTCTTCTATCTCAGTATTGAAGGACCCAGTTCATGAATCTTGGCCACTACACCGCAAGAAAATAAGGAAAGTTGTCATCAGGAAAGAAAGAAGGGCCCGGAAGAAGGAGGAAAGTTTTGAGAAAGCTCTTTTGATTGTCAAAACGAGGACAAAAGTTGATGTTGCATGGCAGGATGGAGTACTAGAGCGCGAAAGGGATTCCACAAGTTTGATTCCTATAGATAATCTTGGTGATCATGAATTTGTTTCAGAACAGTATGTGGTAGAGAAGACCTCTGATGATGATGTGGATATTTGTGAAACTAGGCGTGTTGGGGTGGTGAGAAGTGTTAATGCCAAGGAGCGGACAGCTTGCGTGAGGTGGTTAAAACCAGTTGACCGAGCAGAAGATCCTCGAGAATTTGACAAGGAGGAAGTTGTAAGCGTATATGAGCTGGAGGGACATCCAGATTATGATTACTGCTATGGGGATGTAGTTGTTCGCTTGTCGCCTGTGTCTGTCTGTTTAGAAACAACTTCTGTTGAAGAGTCCATAGAAAAATCAAAGCAGAAAAATGAAGAATGCAGGATTAAAAAAGAAACTAAAAGCCGAACAGGAACCAGTAAAGTAGAAAATGCATCTGGTGGTGAAGCTTGTAAGGAGTACTCAGACCCCTATTGGGTTGGAAATATAACTGGTCTTATCAATGGTGATATTGAGGTTACTTGGGCTGATGGAATGGTGTCAACGGTTGGACCCCAAGCAATCTATGTTGTTGGTCGAGATGATGATGAATCAATTGCTGCTGGAAGTGAAATAAGTGATGCAGGAAGCTGGGAAACTCTTAATGATGATGAAATGGAAGTCCTTGAGGAAACCAGAGAGGATATTTTGAGGGGAAATTCAAGCAGCATTACTTCTGCGTCAGAAGAGAGTGGAGAGAATGGCTTTGGTAGGTCTGCAGCACTTGCTGTTCCCCTAGCAGCATTTCGTTTTGTCACCAGACTTGCCACTGGAATATTCTCAAGGGGGCAAAGAAACTTAAATCTTGTGCACTTGCAGCCAAAAGATGAAAGTGAACTCCCATTGCGTGATGAGTCTAGTTCTCAGAAATGTGTTGCCACTGTTGGTGAAAATTCAGGCAATAAGAGTGGAAGAAATGAGGAAGTTGTTCCAGATACATCTGAAATTTTGGAAGCATGTGAGGCATTGTGTACCTTCAGGAATGAAGATGCTCCAGCAAGTTACGATGATGGGGCTTGCAGTTTCAAACACTTTGATATAACTAAAGATCCTTTAGACCATTATTTTACTGGCACAAATGGACAGAGTAACGACAGAAAATGGTTTAAGAAGATGCAACAAGATTGGACAATATTGCAGAATAACCTTCCTGAGGAAATTTATGTACGAGTTTATGAAGATAGAATGGATCTCTTGAGGGCAGTTATTGTTGGGCCATATGGAACCCCTTACCAAGATGGGCTTTTTTTCTTCGATTTTCACCTTCCGCCAGAGTACCCTGATGTTCCACCGACGGCTTATTATCATTCTGGTGGTTGGCGCGTTAACCCTAACTTATATGAGGAAGGAAAGGTGTGCCTTAGCCTTCTAAATACATGGACAGGCAGAGGAAATGAAGTATGGGATCCAAAATCTTCTAGCATCCTTCAAGTCCTAGTTTCACTGCAAGGCTTAGTGCTCAACTCTAAGCCTTACTTTAATGAAGCTGGTTATGATAAGCAGATTGGAACAGCTGAAGGAGAGAAGAATTCATTGTCATACAATGAGAATACATTTCTACTTAACTGCAAGACTATGATGTATCTTATGAGGAAACCCCCCAAGGACTTTGAAGTGCTCATCAAAGATCATTTTAGGAGGCGTGGTCATAACATTCTGAAGGCTTGTGATGCATATATGAAAGGTTATTTGATTGGCACGCTGACTAAAGATGCATCTGCAAGTGACAAGAGCATACAAAATTCTACTTCTGTGGGTTTCAAGTTGATGTTAGCCAAGATTGTGCAAAAGCTTTACTTGTCGCTGAAGGAGGTTGGAGCTGATTGCGAAAAATTTAAACATCTACAAGGGTTGTAA 3405 0.4109 MGVQQHDGLSEDNKPAGDACVSSSVNQQGPVSVSDVCNPSEDTESGAVNEPSGVSCKNSNTSHFYRQDAVRNTTSGLIGIVTEVAGDSDSDSSITDDEDDSEDEDADSEEENGDDSNNDSRNCDQNSADGDCKTGALLADQMRVLWINESESTQNFDDVEVVDRGFLHGDFVAAASDPTGQVGVVVDVNISVDLLAPGGSIIKDISSKSLKRIRDFTIGDYVVLGPWLGRIDDVLDNVTVLFDDGSVCKLTKADPLNLQPVSKNILEDGHFLYYPGQRVRASSSSVFKNSRWLSGLWKANRLEGTVTNVTVGSVFVRWISSAGYGPYSSSSPAEEQSPKDLKLLSCFAHANWQLGDWCLLPSSAPSSSISLDKGISKLELNDSVKNELDSNHKGSVCDSEEVTIEELNGNMDLMDHDPVDALEENDRNIGSNPSRDSSSCGSSSISVLKDPVHESWPLHRKKIRKVVIRKERRARKKEESFEKALLIVKTRTKVDVAWQDGVLERERDSTSLIPIDNLGDHEFVSEQYVVEKTSDDDVDICETRRVGVVRSVNAKERTACVRWLKPVDRAEDPREFDKEEVVSVYELEGHPDYDYCYGDVVVRLSPVSVCLETTSVEESIEKSKQKNEECRIKKETKSRTGTSKVENASGGEACKEYSDPYWVGNITGLINGDIEVTWADGMVSTVGPQAIYVVGRDDDESIAAGSEISDAGSWETLNDDEMEVLEETREDILRGNSSSITSASEESGENGFGRSAALAVPLAAFRFVTRLATGIFSRGQRNLNLVHLQPKDESELPLRDESSSQKCVATVGENSGNKSGRNEEVVPDTSEILEACEALCTFRNEDAPASYDDGACSFKHFDITKDPLDHYFTGTNGQSNDRKWFKKMQQDWTILQNNLPEEIYVRVYEDRMDLLRAVIVGPYGTPYQDGLFFFDFHLPPEYPDVPPTAYYHSGGWRVNPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQIGTAEGEKNSLSYNENTFLLNCKTMMYLMRKPPKDFEVLIKDHFRRRGHNILKACDAYMKGYLIGTLTKDASASDKSIQNSTSVGFKLMLAKIVQKLYLSLKEVGADCEKFKHLQGL 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0239 1134 CDD UBCc 886 1036 IPR000608 -
Lal13g0239 1134 SUPERFAMILY UBC-like 869 1050 IPR016135 -
Lal13g0239 1134 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 59 1132 - -
Lal13g0239 1134 MobiDBLite consensus disorder prediction 427 446 - -
Lal13g0239 1134 MobiDBLite consensus disorder prediction 626 641 - -
Lal13g0239 1134 MobiDBLite consensus disorder prediction 1 60 - -
Lal13g0239 1134 Pfam Ubiquitin-conjugating enzyme 888 1032 IPR000608 -
Lal13g0239 1134 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 883 1043 IPR000608 -
Lal13g0239 1134 MobiDBLite consensus disorder prediction 423 446 - -
Lal13g0239 1134 MobiDBLite consensus disorder prediction 626 647 - -
Lal13g0239 1134 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 59 1132 - -
Lal13g0239 1134 MobiDBLite consensus disorder prediction 83 130 - -
Lal13g0239 1134 Gene3D Ubiquitin Conjugating Enzyme 854 1120 IPR016135 -
Lal13g0239 1134 MobiDBLite consensus disorder prediction 17 60 - -
Lal13g0239 1134 SMART ubc_7 886 1043 - -
Lal13g0239 1134 MobiDBLite consensus disorder prediction 90 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0239 Lal-Chr13 1511445 1520014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0239 145 364 Miscellaneous Gene Families AT2G33770 37.104 1.38e-48 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0239 K10581 - gmx:100809513 1647.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0239 13 1511445 1520014 Lal13g0239 13 1511445 1520014 ECH
Lal13g0239 13 1511445 1520014 Lal24g0200 24 1458306 1466015 LSH