Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0056 ATGTCTCACACCATGAAGCTGGGTCCAAAACTCAGAAATTCCTATGTACTTGGTTGGATCTCAATTATTGTGACATTAGTATCAGTAGGAGGAGGGGTAGAATATCCTGCAATCAATTGTAGAAAGCACGGTGCAGTTTTGACAGATTTTGGTGCTGTTGGAGATGGTGAAACATCAAACACTTATGCCTTTAAATCAGCAATAACATACCTTAGCCAGTATGCAAATGATGGGGGTTCATTACTTGTTGTGCCACCTGGGAAATGGTTAACTGGAAGCTTTAATCTCACAAGTCATTTCACTCTTTTTCTCCAAAAGGATGCTCTCATTCTTGCATCTCAGGATGAATCAGAATGGCCTTCACTTCCCGTTCTACCATCTTATGGTAGAGGAAGAGATGCACCTGATGGAAGATATAGCAGTCTCATTTTTGGAACTAACCTCACCGATGTTGTTATTACGGGTGACAATGGGACTATTGATGGCAAAGGATCTTATTGGTGGAGCAAGTTCAAAAATGACGAATTGAAACTCACAAGGCCATACCTAATTGAAATTATGTACTCAGATCAAATCCAGATATCAAATCTCACTTTACTCAACTCCCCAAGCTGGTTTGTCCATCCAATTTACAGCAGTAACATAATAATTCAAGGGCTGACTATTCTTGCACCAATAGACTCACCCAACACAGATGGAATAGACCCAGATTCATGTAATAACACTAGGATTGAAGACTGCTACATTGTGTCCGGTGATGATTGTATTGCAGTAAAAAGTGGTTGGGATGAGTACGGAATTAAAGTTGGAATTCCAACCCAACACCTAATCATTAGAAGGATTACTTGTATATCTCCAGATAGTGCTATGATTGCACTAGGAAGTGAAATGTCTGGTGGAATCCAAGATGTAAGAGCTGAAAATAACATAGCTATCAATACTCAATCAGCTGTTAGAATCAAAACTGCAGTTGGTAGAGGAGGATATGTTAAGGACGTTTTTGTTAAAGGGATGACCTTGAGTACCATGAAGTATGTATTTTGGATGACAGGCTCTTATGGATCTCATCCTCACCCTGATTTTGATCCCAATGCACTTCCTCAAATTACTCGAATAAATTATAGAGATATTATTGCAGATAATGTTACATATTCAGCAAGACTTGAAGGGATTAATAATGATCCTTTCACAGGAATATGCATTTCTAATGTGACTATCGAAGTGAGTCAAAAGAAAAAAAAGAAACTTCAATGGAATTGCACTGATATTGCTGGAGTTACAAACAGTGTCATTCCTCAGCCATGTGATTTGCTGCCACAGAAGGATGGAAATGAATGTCCTTATCCAAATCACATACTTCCCATTGAGAATGTTAAGTTCCACACTTGTGCCTTCTAA 1398 0.387 MSHTMKLGPKLRNSYVLGWISIIVTLVSVGGGVEYPAINCRKHGAVLTDFGAVGDGETSNTYAFKSAITYLSQYANDGGSLLVVPPGKWLTGSFNLTSHFTLFLQKDALILASQDESEWPSLPVLPSYGRGRDAPDGRYSSLIFGTNLTDVVITGDNGTIDGKGSYWWSKFKNDELKLTRPYLIEIMYSDQIQISNLTLLNSPSWFVHPIYSSNIIIQGLTILAPIDSPNTDGIDPDSCNNTRIEDCYIVSGDDCIAVKSGWDEYGIKVGIPTQHLIIRRITCISPDSAMIALGSEMSGGIQDVRAENNIAINTQSAVRIKTAVGRGGYVKDVFVKGMTLSTMKYVFWMTGSYGSHPHPDFDPNALPQITRINYRDIIADNVTYSARLEGINNDPFTGICISNVTIEVSQKKKKKLQWNCTDIAGVTNSVIPQPCDLLPQKDGNECPYPNHILPIENVKFHTCAF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0056 465 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 31 464 - -
Lal13g0056 465 Gene3D - 35 430 IPR012334 -
Lal13g0056 465 Pfam Glycosyl hydrolases family 28 141 421 IPR000743 GO:0004650|GO:0005975
Lal13g0056 465 PANTHER PECTIN LYASE-RELATED 31 464 - -
Lal13g0056 465 SUPERFAMILY Pectin lyase-like 46 440 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0056 Lal-Chr13 357120 359307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0056 28 463 Glycoside Hydrolase AT3G48950 66.893 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0056 - - gmx:100779166 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0056 13 357120 359307 Lal13g0056 13 357120 359307 ECH
Lal12g0066 12 434598 437181 Lal13g0056 13 357120 359307 LSH