Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0066 ATGTCTCACACCGTGAAATTTTATCCAAAACTCGGAAATTCCTATTTTTTTGTACAGGTGATTGGTGTAATCTCAATTATTGTGATATTAGTATCAGTGGCAGAATGCATTGGGGTACAATATCAAGCAATGGATTGCAGAAAACACAGTGCAGTTTTAACAGATTTTGGTGCTGTTGGAGATGGCAAAACATCTAACACAAAAGCTTTTAAAACAGCAATAACAAATCTTAGCCAGCATGCAAATGATGGTGGTGCACTTCTTGTTGTGCCACCTGGGAAATGGTTAACTGGATGCTTTAATGTCACAAGCCATTTCACTCTTTTTCTCCAAAAGGATGCTGTCATTCTTGCATCTCAGGATGAATCAGAATGGCCTGTACTTCCTGTTCTACCATCTTATGGAAGAGGAAGAGATGCACCTGATGGAAGGTTCAGCAGTAACAATGGGACAATTGATGGCCAAGGACCTTATTGGTGGGCTAAGTTCAAAAGGAAAGAATTTACACTTACCAGACCATACATGATTGAAATCATGTACTCTAATCAAATCCAAATATCAAACCTTACTTTGGTCAATTCTCCATCTTGGTTTGTCCATCCAATTTATAGCAGTAACATAATAATTCAAGGGCTCACCATTCTTGCACCAGTGGATTCTCCTAACACAGATGGGATAAATCCAGATTCATGTACGAACACTAAGATTGAAGACTGCTACATTGTGTCCGGTGATGATTGTATTGCAGTCAAAAGTGGTTGGGATCAATATGGAATTAAAGTTGGAATGCCAACCCAACATCTAATCATTAGAAGGCTTACTTGTATATCTCCAGATAGTGCTATGATTGCATTAGGAAGTGAAATGTCTGGTGGAATTCAACATGTTAGAGTTGAAGATAACACAGCTATCAATACTCAATCAGCTGTTAGAATCAAAACTCAAATTGGTAGAGGAGCATATGTTAAGGATATTTTTGTTAAAGGAATGACCTTGAAAACCATGAAGTATGTATTTTGGATGACTGGTGCTTATGGATCTAATGCCGACTCTGGCTTCGATCCCAAAGCACTTCCTGAAATTACTCGAATAAATTATAGAGACATTACAGCAGATAATGTCACATATGCAGCAAGACTTGATGGAATTACTAATAATCCTTTCACAGGAATCTGCATATCTAATGTGCATATCAAAGTGAGTGAAGAGAATAAGAAACTTCAGTGGAATTGCACAGATATTGCTGGAGTCACAAGCAATGTCACTCCCCAGCCATGTAGTTTGCTGCCTGAGAAGAAAGGACAGGACTGTCCTTATCCAAAGGACAAAGTTCCCATTGACAATGTTCATTTGAAGACTTGTTCCTTCTAA 1371 0.3829 MSHTVKFYPKLGNSYFFVQVIGVISIIVILVSVAECIGVQYQAMDCRKHSAVLTDFGAVGDGKTSNTKAFKTAITNLSQHANDGGALLVVPPGKWLTGCFNVTSHFTLFLQKDAVILASQDESEWPVLPVLPSYGRGRDAPDGRFSSNNGTIDGQGPYWWAKFKRKEFTLTRPYMIEIMYSNQIQISNLTLVNSPSWFVHPIYSSNIIIQGLTILAPVDSPNTDGINPDSCTNTKIEDCYIVSGDDCIAVKSGWDQYGIKVGMPTQHLIIRRLTCISPDSAMIALGSEMSGGIQHVRVEDNTAINTQSAVRIKTQIGRGAYVKDIFVKGMTLKTMKYVFWMTGAYGSNADSGFDPKALPEITRINYRDITADNVTYAARLDGITNNPFTGICISNVHIKVSEENKKLQWNCTDIAGVTSNVTPQPCSLLPEKKGQDCPYPKDKVPIDNVHLKTCSF 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0066 456 Gene3D - 29 424 IPR012334 -
Lal12g0066 456 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 35 455 - -
Lal12g0066 456 SMART pbh1 204 230 IPR006626 -
Lal12g0066 456 SMART pbh1 231 252 IPR006626 -
Lal12g0066 456 SMART pbh1 293 314 IPR006626 -
Lal12g0066 456 Pfam Pectate lyase superfamily protein 54 96 IPR024535 -
Lal12g0066 456 PANTHER PECTIN LYASE-RELATED 35 455 - -
Lal12g0066 456 Pfam Glycosyl hydrolases family 28 149 414 IPR000743 GO:0004650|GO:0005975
Lal12g0066 456 SUPERFAMILY Pectin lyase-like 46 433 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0066 Lal-Chr12 434598 437181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0066 39 454 Glycoside Hydrolase AT3G48950 69.195 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0066 - - gmx:100779166 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0066 12 434598 437181 Lal12g0066 12 434598 437181 ECH
Lal12g0066 12 434598 437181 Lal13g0056 13 357120 359307 LSH