Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0048 ATGTGGCCATTCAGCAGAAAAGGGGGTTCTGGATTTTCGTCATCTTCCACTGCTCAACAGGTTACAGATAACATCGATGCCACTGGCCTCACTGCCGTTGTCACTGGAGCATCCAGTGGTATTGGCACTGAGACTACCCGTGTTCTTGCGTTGCGTGGTGCCCATGTGATTATGGGGGTGAGAAATATGAATGCTGCTAAAGATGTCAAAGAAGCAATACTTAAAGAGATTCCGTCGGCTAAAGTTGATGCCATGGAGTTAGATCTCGGTTCAATGGACTCTGTCAAGAAATTTGCATCTGAGTTTAAATCCTCTGGTCTTCCACTGAACATCCTGATAAACAATGCAGGAATTATGGCATGCCCTTTCGCGCTCTCCAAAGACAACATTGAACTACAGTTTGCCACTAATCACATAGGTCATTTTCTTTTGACAAGTCTTCTGCTGGATACTATGAAGAACACAGCAAATACAACTAAGAAAGAAGGTAGAATTGTTAATGTATCCTCGGAGGCTCACCGGTTTCCTTATCCGGAAGGAATTCGTTTTGACAAAATAAATGATCAATCAAGTTACAACAATTGGCGTGCATATGGACAGTCAAAGCTTGCCAACATTTTACATGCGAATGAACTTACCAGACGTCTCAAGGAAGACGGGGTGAATATTACTGCAAACTCTCTTCATCCGGGAGCCATTTTGACCAATCTCTTCCGCCATAATGCTGCAGTGAACGGTCTAATTAATGTATTTGGGAGATTCGTGCTTAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTACACCCACAAGTGAAGGGAACTAGTGGCAAGTATTTTTCAGATAGTAATGAGTCCAAAACAACCCCACATGGCACTGACGCTGATTTGGCTAAGAGACTCTGGGATTTCAGCATCAATTTGATCAAGTAA 942 0.431 MWPFSRKGGSGFSSSSTAQQVTDNIDATGLTAVVTGASSGIGTETTRVLALRGAHVIMGVRNMNAAKDVKEAILKEIPSAKVDAMELDLGSMDSVKKFASEFKSSGLPLNILINNAGIMACPFALSKDNIELQFATNHIGHFLLTSLLLDTMKNTANTTKKEGRIVNVSSEAHRFPYPEGIRFDKINDQSSYNNWRAYGQSKLANILHANELTRRLKEDGVNITANSLHPGAILTNLFRHNAAVNGLINVFGRFVLKNVQQGAATTCYVALHPQVKGTSGKYFSDSNESKTTPHGTDADLAKRLWDFSINLIK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0048 313 PANTHER RETINOL DEHYDROGENASE 2 313 - -
Lal13g0048 313 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 313 - -
Lal13g0048 313 Gene3D - 17 313 - -
Lal13g0048 313 Pfam short chain dehydrogenase 31 180 IPR002347 -
Lal13g0048 313 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Lal13g0048 313 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Lal13g0048 313 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Lal13g0048 313 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Lal13g0048 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 289 IPR036291 -
Lal13g0048 313 CDD retinol-DH_like_SDR_c_like 29 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0048 Lal-Chr13 319649 323908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0048 31 170 Acyl Lipid Metabolism Gene Families AT1G62610 31.544 1.01e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0048 - - gmx:100784001 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0048 13 319649 323908 Lal13g0048 13 319649 323908 ECH
Lal12g0057 12 382018 384527 Lal13g0048 13 319649 323908 LSH