Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0057 ATGTGGCCATTCAACAGAAAAGGTGTTTCTGGTTTTTCATCAACTTCCACTGCTCAAGATGTTACTCATGACATTGATGCCACTGGCCTCACTGCCATTGTCACTGGAGCATCCAGTGGTATCGGCGCTGAGACTGCTCGTGTTCTAGCGTTGCGCGGTGCCCATGTGATTATGGGGGTGAGAAATATGACTGCTGCTAATGACGTCAAAGAATCAATACTTAAGGAGATTCCATCAGCTAAAGTTGATGCAATAGAATTAGATCTCAGTTCAATGGACTCTGTCAAGAAATTTGCATCAGAGTTTAATTCCTCTGGTCTTCCACTTAACATTCTGATAAACAATGCAGGAATTATGGCATGCCCTTTCGCGCTCTCCAAAGACAACATTGAACTACAACTAAGAAGATGTCCAAGTGATCTCAATTCCGCAGGCCATTTTCTGTTGACACATCTTTTGCTGGATAATATGAAGAAAACAGCACATGAAAGTAAGAAACAAGGAAGAATTGTTAATGTCGCTTCAGAGGCTCATCGGTTTCCATATCCAGAAGGAATCCGTTTTGACAAAATTAATGATCAACCAAGTTACAACAGTTGGCGTGCATATGGGCAATCAAAGCTTGCCAACATTTTACATGCTAATGAACTTGCAAGACGCTTCAAGGAAGATGGGGTGGATATTACTGCAAACTCACTTCACCCGGGAGTCATTTCGACCAATCTCATCCGCCATAATCCTGTAATGAGCGGTGTAATGAATTTCGTTGGGAGACTTTTACTTAAAAATGTCCAACAGGGAGCAGCAACAACATGTTATGTAGCATTACACCCTCAAGCGAAGGGAATCAGTGGCAAGTATTTTTCAGATAGTAATGAGTACAAAACAACCCCTTACGGCACTGATGCTGATTTGGCTAAGAAGCTCTGGGATTTCAGCATTAATTTGATCAAGTAG 957 0.419 MWPFNRKGVSGFSSTSTAQDVTHDIDATGLTAIVTGASSGIGAETARVLALRGAHVIMGVRNMTAANDVKESILKEIPSAKVDAIELDLSSMDSVKKFASEFNSSGLPLNILINNAGIMACPFALSKDNIELQLRRCPSDLNSAGHFLLTHLLLDNMKKTAHESKKQGRIVNVASEAHRFPYPEGIRFDKINDQPSYNSWRAYGQSKLANILHANELARRFKEDGVDITANSLHPGVISTNLIRHNPVMSGVMNFVGRLLLKNVQQGAATTCYVALHPQAKGISGKYFSDSNEYKTTPYGTDADLAKKLWDFSINLIK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0057 318 Gene3D - 21 318 - -
Lal12g0057 318 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Lal12g0057 318 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Lal12g0057 318 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Lal12g0057 318 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 318 - -
Lal12g0057 318 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 295 IPR036291 -
Lal12g0057 318 Pfam short chain dehydrogenase 31 185 IPR002347 -
Lal12g0057 318 PANTHER RETINOL DEHYDROGENASE 2 318 - -
Lal12g0057 318 CDD retinol-DH_like_SDR_c_like 29 310 - -
Lal12g0057 318 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Lal12g0057 318 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Lal12g0057 318 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Lal12g0057 318 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0057 Lal-Chr12 382018 384527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal12g0057 29 244 Lipid Metabolism Gene Families AT1G67730 28.111 2.69e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0057 - - gmx:100784001 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0057 12 382018 384527 Lal12g0057 12 382018 384527 ECH
Lal12g0057 12 382018 384527 Lal13g0048 13 319649 323908 LSH