Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0019 ATGAAGAGCAGCATGGGTAGGGTATCATGGATTTCAATATTGTTAGTTACTCTAATATTGGAAATAGTAGAATTGTGTATTTGTAGGCATGAGGAAGTAACAACACCACCATTACCAATTCTCCCTCTACCAACATATTCACAGTTGAAATGGCAAGAAAGGGAAATCATAATGTTCCTCCATTTTGGTGTCAACACATTCACTAATAAAGAATGGGGAAGTGGGCATGAAAAAGCATCAATATTCAACCCTTCTGGCCTTAACACAACTCAATGGGCAAGTGTAGCAGCAGAGGCAGGAATATCATTGATGATTCTAACAGCAAAACACCATGATGGATTTTGTCTTTGGCCTTCTAAGTACACTCCACATTCTGTCATTAGCAGTCCCTGGAAAAGTGGCAAAGGTGATGTTGTGCAAGACTTTCTAGATGCAGCCACTGCACAACGTATAGATGTTGGCATTTATCTCTCACCATGGGATAAACACGAACCTAGATATGGTCTTGATGTGCCTTACAATGAATACTATTTGGCTCAATTGCAAGAGCTTCTCAATAAGTATAAAAATATAAAAGAAATTTGGTTTGATGGAGCAAAGGATCCAAAGGCACAAAACGTGTCATATTACTTTTCAGAATGGTTTTCTATGGCGAAGGTGTTGCAGAGTTGTATCAATATATTCTCTGATGCTGGTCCTGATGTTAGATGGGTTGGAGATGAAACAGGAACTGCAGGGGACACATGTTGGTCTACCATTAATCGAACCTCTCTATCAATTGGAGATCCAGACATTGCTGAGTATCTAAACACTGGTGATCCGAGAGGGACAGATTGGCTACCAGCGGAATGTGATGTTTCAATCAGGAAGGGATGGTTTTGGCATAAGTCAGAGTCTCCAAAAAAGCTATCCCACCTGCTAGATATTTATTACAACTCGGTTGGCAAAAATTGTGTGTTACTTCTCAATGTGCCACCTAATACAACCGGTCTTATATCTCACACTGATGCTCTTCGGTTGAAAGAATTTAGAAGTGCAATTAACACAATTTTTCATCACAATCTAGCTGAAAGTTGTTCCATTAAAGTAAGTAGCCAAAGAGGGGGCAAAGAAGGAGGAGTTTTTGGACCAGAAAACATGCTAGATAGTGACCACTTGTGGTCATACTGGGCCCCAAAGGAAGATGGGAATGAAAAGGACCATTGGATTGAAATATGGAGCAGGGATGGGAATTTAAGATTCAATGTGATTAGAATACAAGAAGCAATTGGATTTGGTCAAAGGATCAAAGAGCATGAGATTTATGTGGATGGCAAAGTTATAATCAAAGGTACAACAGTGGGCTACAAAAGGCTTCATAGGCTTGTTGAAGTTGTGGGGCATGCACATGTTGTGACCATCAGAATCACAAAATCAAGAGGAGTGCCTCTTATTTCTTCTATTGGTTTGCATTTTGATCCTTTCTGGCACTCAAGGTTGACACTGGCTTCAAAGTAG 1497 0.4008 MKSSMGRVSWISILLVTLILEIVELCICRHEEVTTPPLPILPLPTYSQLKWQEREIIMFLHFGVNTFTNKEWGSGHEKASIFNPSGLNTTQWASVAAEAGISLMILTAKHHDGFCLWPSKYTPHSVISSPWKSGKGDVVQDFLDAATAQRIDVGIYLSPWDKHEPRYGLDVPYNEYYLAQLQELLNKYKNIKEIWFDGAKDPKAQNVSYYFSEWFSMAKVLQSCINIFSDAGPDVRWVGDETGTAGDTCWSTINRTSLSIGDPDIAEYLNTGDPRGTDWLPAECDVSIRKGWFWHKSESPKKLSHLLDIYYNSVGKNCVLLLNVPPNTTGLISHTDALRLKEFRSAINTIFHHNLAESCSIKVSSQRGGKEGGVFGPENMLDSDHLWSYWAPKEDGNEKDHWIEIWSRDGNLRFNVIRIQEAIGFGQRIKEHEIYVDGKVIIKGTTVGYKRLHRLVEVVGHAHVVTIRITKSRGVPLISSIGLHFDPFWHSRLTLASK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0019 498 Gene3D - 369 484 - -
Lal13g0019 498 SUPERFAMILY (Trans)glycosidases 39 348 IPR017853 -
Lal13g0019 498 PANTHER ALPHA-L-FUCOSIDASE 29 493 IPR000933 GO:0004560|GO:0005975
Lal13g0019 498 SMART alpha_l_fucos 41 380 IPR000933 GO:0004560|GO:0005975
Lal13g0019 498 PANTHER OS09G0520800 PROTEIN 29 493 - -
Lal13g0019 498 Gene3D Glycosidases 38 357 - -
Lal13g0019 498 Pfam Alpha-L-fucosidase 65 342 IPR000933 GO:0004560|GO:0005975
Lal13g0019 498 PRINTS Glycosyl hydrolase family 29 signature 103 119 IPR016286 GO:0004560|GO:0006004
Lal13g0019 498 PRINTS Glycosyl hydrolase family 29 signature 151 170 IPR016286 GO:0004560|GO:0006004
Lal13g0019 498 PRINTS Glycosyl hydrolase family 29 signature 305 326 IPR016286 GO:0004560|GO:0006004
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0019 Lal-Chr13 125310 127108 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0019 K01206 - gmx:100805382 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0019 13 125310 127108 Lal13g0019 13 125310 127108 ECH
Lal13g0019 13 125310 127108 Lal24g0026 24 181105 183023 LSH