Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g1038 ATGCCTTCCGGTCAATTACTTCTCGAAGAACCCATTAGAATGGCTTCAATACTCGAACCATCCAAACCCAGCTTTTTCTCTGCAATGACAAAGATTGTTGGTACCTTGGGTCCTAAATCTCGATCTGTTGAGGTTATTTCTGGTTGTCTCAAGGCTGGGATGTCTGTGGCTCGTTTTGACTTTTCGTGGTGTGACCCGGATTATCACCAAGAGACTTTGGAGAATTTGAAAATTGCTATCAAGAGTACTAAGAAGCTCTGTGCCATTATGCTGGATACAGTAGGTGCGGAGATGCAAGTTGTAAACAAAAGTGAGACAACAATCACGCTTCAACAGGATGGTGAGGTTGTTCTAACACCTGACCAGGGACATGAAGCTACTTCAGAGATATTGCCTATCAATTTTGATGGCCTGGCTGAGTCAGTGAAAAAGGGAGACACTATCTTTATTGGTCAATACCTGTTCACAGGAAGTGAAACTACATCTGTATGGCTAGAGGTATCTGAAGTCAAAGGGAAAGACGTTGTTTGTATTATAAAGAATTCGGCAACATTGCATGGGTCATTGTTCACGTTACATGCCTCTCAAGTTCACATTGATTTGCCCACCCTTACTGAGAAAGATAAGGAGGTTATAAGCACCTGGGGAGTTAAAAACAAAATTGATTTTTTGTCATTGTCATACACCCGACACGCTGAAGATGTTCGTCAGGCTCGTGAATTCCTTTCTAAGTTAGGTGATCTCAGCCAAACTCAAATTTTTGCGAAGATTGAAAATGTTGAGGGATTGACACATTTTGATGAGATTCTACAAGAAGCTGATGGTATTATCCTTTCCCGTGGGAATTTGGGCATTGATCTTCCACCAGAGAAGGGATTTTTATTTCAAAAATCTGCCCTTAACAAGTGTAATATGGCTGGGAAACCTGCTGTACTCACACGTGTTGTGGATAGTATGACTGACAACTTGAGGCCAACTCGTGCTGAAGCCACAGATGTTGCCAATGCTGTTTTAGATGGAAGTGATGCGATACTTCTGGGTGCCGAGACTTTACGTGGGTTGTACCCTGTTGAGACCATTTATACAGTTGGCAGAATTTGTTCAGAGGCTGAGAAAGTTTTCAATCAAGACCTTTATTTCAAGAAGACCGTCAAATTTGTTGGAGAACCCATGACCCATTTGGAATCTATTGCATCCTCTGCGGTGCGAGCAGCTATTAAGGTGAAGGCCTCAATTATAATTTGTTTCACTTCATCTGGAAGGGCTGCAAGATTGATAGCGAAGTATAGGCCAACAATGCCTGTTCTCTCAGTTGTGATCCCTCGACTTAAGTCAAATCAACTAAAATGGAGCTTTAGTGGAGCTTTTGAGGCAAGGCAATCACTTATTGTCAGAGGTCTCTTTCCCATGCTTGCTGATCCCCGTCATCCGGCTGGGTCAACAAGTGCAACAAGTGAGACAATTCTTAAGGTTGCCCTTGATCATGGAAAAGCACTGGGAATCATAAAATCTCATGATAGAGTAGTTGTTTGTCAGAAACTTGGTGATGCATCTGTGGTTAAGATTATTGAGCTTGAAGATTAA 1584 0.4217 MPSGQLLLEEPIRMASILEPSKPSFFSAMTKIVGTLGPKSRSVEVISGCLKAGMSVARFDFSWCDPDYHQETLENLKIAIKSTKKLCAIMLDTVGAEMQVVNKSETTITLQQDGEVVLTPDQGHEATSEILPINFDGLAESVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGKDVVCIIKNSATLHGSLFTLHASQVHIDLPTLTEKDKEVISTWGVKNKIDFLSLSYTRHAEDVRQAREFLSKLGDLSQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKGFLFQKSALNKCNMAGKPAVLTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETIYTVGRICSEAEKVFNQDLYFKKTVKFVGEPMTHLESIASSAVRAAIKVKASIIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKSNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAGSTSATSETILKVALDHGKALGIIKSHDRVVVCQKLGDASVVKIIELED 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g1038 527 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 8 375 IPR015813 GO:0003824
Lal12g1038 527 SUPERFAMILY PK beta-barrel domain-like 103 187 IPR011037 -
Lal12g1038 527 PANTHER PYRUVATE KINASE 3 527 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lal12g1038 527 Gene3D - 30 362 IPR040442 -
Lal12g1038 527 PANTHER PYRUVATE KINASE 3 527 - -
Lal12g1038 527 PRINTS Pyruvate kinase family signature 85 101 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lal12g1038 527 PRINTS Pyruvate kinase family signature 221 235 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lal12g1038 527 PRINTS Pyruvate kinase family signature 253 279 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lal12g1038 527 PRINTS Pyruvate kinase family signature 280 304 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lal12g1038 527 PRINTS Pyruvate kinase family signature 329 347 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lal12g1038 527 PRINTS Pyruvate kinase family signature 348 364 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lal12g1038 527 Pfam Pyruvate kinase, barrel domain 30 375 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lal12g1038 527 Gene3D - 363 522 IPR036918 -
Lal12g1038 527 Pfam Pyruvate kinase, alpha/beta domain 395 522 IPR015795 -
Lal12g1038 527 TIGRFAM pyruv_kin: pyruvate kinase 30 517 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lal12g1038 527 Coils Coil 522 527 - -
Lal12g1038 527 Gene3D - 97 201 IPR015806 GO:0004743|GO:0006096
Lal12g1038 527 SUPERFAMILY PK C-terminal domain-like 358 515 IPR036918 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g1038 Lal-Chr12 9650270 9660846 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g1038 K00873 - gmx:100802271 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1038 12 9650270 9660846 Lal12g1038 12 9650270 9660846 ECH
Lal12g1038 12 9650270 9660846 Lal24g0949 24 8008853 8019122 LSH
Lal1g1779 1 20168151 20174823 Lal12g1038 12 9650270 9660846 PCT
Lal12g1038 12 9650270 9660846 Lal1g1779 1 20168151 20174823 PCT