Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0524 ATGGTAGCCCATTTTCATAGGAGAATCAGAAAGAACAACAATGATGATGAATCGGTAATAGATGGTGAATCTGAGAAAGAAGAAGAAGAAGAAGAAGAAGAAAAAATGGTCGCAGATGAAGTACCAGTGGACGATAAAGCAAAGAGAATGAGAGATCTTCTATCCAGTTTCTACTCTCCAGATCCTTCAATTTCCTCCAATTCCATCACCAATTCTTCCAAACACGATGATATCAACTCTGATTCCTTCGATCCCGATCATTACATGAATATCATCGCACATAAGTCCAATTTGGAAGGGTTACTCCAACGACATGTTGAAATGGCTGCTGAGATTAAGAATCTCGACACTGATTTGCAAATGCTTGTTTATGAAAATTACAACAAGTTCATCAGTGCCACTGATACTATCAAGAGGATGAAAAGTAACATTTCCGGGATGGAGACAAATATGGAGAACCTTCTTGAGAAGATAGTGTCTGTGCAGTCGAGGAGTGACAGTGTTAACACTTCTCTGTTTGACAAAAGGGAGCATATAGAGAAACTGCACCGCACCTGCAATCTTCTTCGTAAAGTTCAGTTTATATATGATCTTCCTGATAGACTTGGCAAGTGCATCAAATCAGAGGCCTATGCTGATGCAGTCAGGTTTTACACTGGAGCAATGCCAATTTTTAAGGCCTATGGAAACTCATCATTCCAGGATTGTAAGCAAGCATCTGAAGAAGCAATAGCTACCATAATAAAAAACTTGCAGGGGAAGCTATTTTCAGACTCTGAATCAATACAAGCAAGAGCTGAAGCTGCAGTGCTCCTTAAGCGGTTGGATTTTCCGGTGGATAACTTGAAGGCAAGGTTACTTGAAAAGTTAGAACAATCTCTTACAGATATTGAGCTGAAACCTGCAGAAATAAACAACCCTTCAGTGGACCTTTCTCCTTCAGCAGCTGCTCATAAGGCAGCTGTTCATGAATTTACTGAGGCAGTTCGTGCTTTTCGAGCAATATTTCCTGATTCAGAAGAGCAGTTGGTTAAACTTGCTCATGGCTTGATTACTAAGAACTTTGTAATTACTGAAGAACATGTAAAGACACGGATTTGCGCAGATGATCTACTTGGCGTTCTTAGAGTTATCTGGGATGATGTAATCCTTATAGATGAAGTCTTACAGGAAGCAGCTCTCTCTAACAATTCTTTTGAGGCTGCCAAGATTGTCGTCACACTGTATGTTAGAAGTGCATTTTCTCATCTTTTGCAAGACATTGCAGATTCCCTCGTAAAAATCCTGATAAAGGATGGAGGAGAGGAGTGCACTCTGGATGTGGTTCTTGATGCCAGCAAAAAAAGAGTTCTACAAGGAGGCACAGATGTCTTACTGGACTTCCGCAAAATTTTAGATCATGACTCTGGAATCCTAGTTAGACTAAGAGAGTCAATCATTGATTGGGTTCAAGAAGGATTTCAAATCTTTTTTAGGCAACTTGAGGATCAATTCCTTCAGTTTTCAGGAAAAAGTAAATCTTCATCTATTATAGATCGTGGTTTGGCAGAGGGAGCTCAAGGTGACAAAGCTTTTGCTGGCCTTGTCCTAGTGCTGGCACAATTGTCTGCTTTTATTGAACAAACTGAAATAGCTGCTTCCTTTTCTGGTGGTAGTGCTAGAGGCTATGATTATGGACCTGCCTTTGTTCCTGGTGAAATCTGTCGGAAATTTCGGTCAGCTGGTGAAAAATTCCTGCATCTGTACATAAATACGAGAAATCAGAGGATATCACTTCTCCTGAAGAAGCGGTTTACCACACCTAATTGGGTTAAGCACAAGGAGCCAAGAGAAGTTCATATGTTTGTTGATTTATTTCTTCAAGAGCTTGAAGTTATAGGTAATGAAGTGAAGCAGATTTTGCCTGAAGGCATACGTAAGCACCGCAGGACTGATAGTGACGGAAGTAGTGTTTCATCAAGGAGCAACCCCTTACGGGATGAGAAATTGGGTAGGTCAAATACAAGGGGAAGGAGCCAACTTCTGGAAACACATCTAGCAAAACTGTTTAAACAGAAAATTGAAATTTTCACAAAAGTTGAATATACACAGGGGTCTGTTGTCACAACTATAGTTAAATTGTGCCTTAAAAGCTTACAAGAATTTGTGCGACTCCATACTTTTAACCGGAGTGGTTTCCAGCAAATTCAACTGGATATTCAGTTCCTAAGAATCCCTTTGAGGGAAACAGTTGAAGATGAAGCTGCAATCGACTTCTTGCTTGATGAGGTGATTGTTGCTACTGCAGAGCGCTGCCTTGATCCAATTCCATTGGAGTTTCCCATACTAGACAAACTTATACAAATAAAATTGGCAAAAACCAAGGAACAAACTACAATCTCTTAA 2385 0.4013 MVAHFHRRIRKNNNDDESVIDGESEKEEEEEEEEKMVADEVPVDDKAKRMRDLLSSFYSPDPSISSNSITNSSKHDDINSDSFDPDHYMNIIAHKSNLEGLLQRHVEMAAEIKNLDTDLQMLVYENYNKFISATDTIKRMKSNISGMETNMENLLEKIVSVQSRSDSVNTSLFDKREHIEKLHRTCNLLRKVQFIYDLPDRLGKCIKSEAYADAVRFYTGAMPIFKAYGNSSFQDCKQASEEAIATIIKNLQGKLFSDSESIQARAEAAVLLKRLDFPVDNLKARLLEKLEQSLTDIELKPAEINNPSVDLSPSAAAHKAAVHEFTEAVRAFRAIFPDSEEQLVKLAHGLITKNFVITEEHVKTRICADDLLGVLRVIWDDVILIDEVLQEAALSNNSFEAAKIVVTLYVRSAFSHLLQDIADSLVKILIKDGGEECTLDVVLDASKKRVLQGGTDVLLDFRKILDHDSGILVRLRESIIDWVQEGFQIFFRQLEDQFLQFSGKSKSSSIIDRGLAEGAQGDKAFAGLVLVLAQLSAFIEQTEIAASFSGGSARGYDYGPAFVPGEICRKFRSAGEKFLHLYINTRNQRISLLLKKRFTTPNWVKHKEPREVHMFVDLFLQELEVIGNEVKQILPEGIRKHRRTDSDGSSVSSRSNPLRDEKLGRSNTRGRSQLLETHLAKLFKQKIEIFTKVEYTQGSVVTTIVKLCLKSLQEFVRLHTFNRSGFQQIQLDIQFLRIPLRETVEDEAAIDFLLDEVIVATAERCLDPIPLEFPILDKLIQIKLAKTKEQTTIS 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0524 794 Coils Coil 137 164 - -
Lal12g0524 794 MobiDBLite consensus disorder prediction 1 46 - -
Lal12g0524 794 Pfam Vps51/Vps67 78 163 - -
Lal12g0524 794 MobiDBLite consensus disorder prediction 20 38 - -
Lal12g0524 794 PANTHER UNCHARACTERIZED 36 756 IPR014812 -
Lal12g0524 794 PANTHER LOW QUALITY PROTEIN: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG 36 756 - -
Lal12g0524 794 MobiDBLite consensus disorder prediction 637 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0524 Lal-Chr12 3739221 3748259 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0524 K20296 - gmx:100818891 1188.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0524 12 3739221 3748259 Lal12g0524 12 3739221 3748259 ECH
Lal3g1383 3 19717953 19728858 Lal12g0524 12 3739221 3748259 PCT
Lal12g0524 12 3739221 3748259 Lal3g1383 3 19717953 19728858 PCT