Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0100 ATGAACAACAACAACAACCTTTTCTTCTCTCTTTTCCTTCTTCTTGTTTCCACACTTTCATCTTCTTCTCTTGCCAGAGTTCCCTTCCACACAAATGCTCCTTCAGGAGACTTCAAGAACACTAGTTATGCAACTCATGCAAGACATTTGTTAGAGGATAATGAGTCCCGGGCTCAGAAAATTGTTGATTTGGCACGAGGGTACATGACCAATGCTGACCTTGAAACAGCCATCAAAGAATTTGGACAAAGTATTGGGAAGAGTGTGCATGGAGTACCACTGTGGGTGATAGAGATTTCTGACAAGCCGGGAGAAGAAGAGATTGAACCTGCATTTAAGTATATTGGAAATGTGCATGGAGATGAACCTGTGGGACGTGAGCTTCTTATATTTCTGGCCAATTGGCTATGTGATAACCATTTGAAAGATCCTCTGGCAACACTGATTGTGGAGAATGTTCACCTTCATATCCTTCCATCAATGAATCCTGATGGGTTTAGTTTAAAAAGGCGTGCTAATGCAAATAATATTGATCTGAACCGGGATTTTCCTGACCAGTTCTTCCCTGTAAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCAATAATGAATTGGTTGAGAGATATACGATTTACAGCGTCTGCCACTTTGCATGGGGGTGCACTTGTTGCAAATTATCCTTGGGACGGTACTGAAGATAAAAAGACAAATTACTATGGAACTCCTGATGATGATACATTTCGATTCATGGCAAGTATATATAGTCATTCTCACTATAACATGTCTTCAAGCAAGGAGTTTGCTGAAGGTACTCACTGCAGGTATCCTATATATGGGGGAATGCAAGATTGGAACTATATACACGCTGGCTGTTTTGAATTGACCTTGGAAGTTAGTGACAATAAATGGCCTAATGCTGCTGAGCTTCCTGTCATTTGGAGATATAACAAAATGAGCATGCTTAATCTTGTTGCAAGCCTGGTGAAGACAGGAGTGCATGGTAGAATATATTCTTCAAGTGATGGAAGGCCATTGCGGGGCTTTATAACTGTCAGTGGAATAAATTACACGGTTAGAGCTGGAATTGTTTTTGCTGACTACCATCGTGTACTTGCCCCAGGAGATAGATACCAAGTAGTGGCAACCATGCCTGGCTACAAATCAAAGAATACAACTATTTGGTTGGATGATGGACCTATGACATTGGATTTTGTTCTTGACCCTGAAGTCAGTGTCAAAGGGAGTGTACTACAAAATGTCTATGACTGCAACTGTAACAGTAAATGCAGACAAGAATTTGTTCAATTTCTTTGGGGAGGTCACTTGGAACTTTACTTTGGTTTCATTCTTATGTTAGGATTTTTATGCATATTATTTCAGAGGAGAGTAATAGCCAAATCTTCAAGGGCAAAAAGAACAGTTGTGAGCAAGTTAAGAGAGCTTATGGAGAGAATAATCTTACAGGGAAATGCTGGTGCTCTCACCAATTTCGAAGTCCTTGATTTCTTACGAACTAAAGGAGCTTCTAAAGACCCAACTCGTGTTATTGCCAAAGTATCACAGTCCGAATACAAGGTTTATGATTATTTGGTTAATACTGCTGCCTGTGATCAATCTAGAGAGAACATCAATGAGTTTGTGAAAGGTGTTAAACGGCATAGCCTCGCAAAAGCTGAGGTTCTAAACACAATAAACATTAGGCCAGCTGCTCCTGTTGAAATTTTTCCTATCATAGAGAACTGTGAGCCTCGATTTCCTGATGAAGAGGTAGCTGAAATAGTAGAGTTGGTGATCAAAACATTGCCACCACCACCTGCCAAAACAAAGCCTGAAGAAATCACTGAGGGTAATGAAGAAACTGCAGAAGACCAAAAGGAAGAAATCACGGAAGGTAATGAAGAAACAGCAGAAGACCAAAATGAAGGTGGGGAACAAATGAACACAAGTTGA 1956 0.4049 MNNNNNLFFSLFLLLVSTLSSSSLARVPFHTNAPSGDFKNTSYATHARHLLEDNESRAQKIVDLARGYMTNADLETAIKEFGQSIGKSVHGVPLWVIEISDKPGEEEIEPAFKYIGNVHGDEPVGRELLIFLANWLCDNHLKDPLATLIVENVHLHILPSMNPDGFSLKRRANANNIDLNRDFPDQFFPVNDDEDSRQPETRAIMNWLRDIRFTASATLHGGALVANYPWDGTEDKKTNYYGTPDDDTFRFMASIYSHSHYNMSSSKEFAEGTHCRYPIYGGMQDWNYIHAGCFELTLEVSDNKWPNAAELPVIWRYNKMSMLNLVASLVKTGVHGRIYSSSDGRPLRGFITVSGINYTVRAGIVFADYHRVLAPGDRYQVVATMPGYKSKNTTIWLDDGPMTLDFVLDPEVSVKGSVLQNVYDCNCNSKCRQEFVQFLWGGHLELYFGFILMLGFLCILFQRRVIAKSSRAKRTVVSKLRELMERIILQGNAGALTNFEVLDFLRTKGASKDPTRVIAKVSQSEYKVYDYLVNTAACDQSRENINEFVKGVKRHSLAKAEVLNTINIRPAAPVEIFPIIENCEPRFPDEEVAEIVELVIKTLPPPPAKTKPEEITEGNEETAEDQKEEITEGNEETAEDQNEGGEQMNTS 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0100 651 PANTHER PROTEASE M14 CARBOXYPEPTIDASE 84 400 - -
Lal12g0100 651 MobiDBLite consensus disorder prediction 603 651 - -
Lal12g0100 651 Pfam Zinc carboxypeptidase 83 318 IPR000834 GO:0004181|GO:0006508|GO:0008270
Lal12g0100 651 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 2 signature. 220 230 IPR000834 GO:0004181|GO:0006508|GO:0008270
Lal12g0100 651 PANTHER CARBOXYPEPTIDASE D 84 400 IPR015567 GO:0004181|GO:0006518|GO:0008270
Lal12g0100 651 MobiDBLite consensus disorder prediction 618 642 - -
Lal12g0100 651 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 85 97 IPR000834 GO:0004181|GO:0006508|GO:0008270
Lal12g0100 651 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 110 124 IPR000834 GO:0004181|GO:0006508|GO:0008270
Lal12g0100 651 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 176 184 IPR000834 GO:0004181|GO:0006508|GO:0008270
Lal12g0100 651 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 217 230 IPR000834 GO:0004181|GO:0006508|GO:0008270
Lal12g0100 651 Pfam RNA polymerase Rpb4 495 601 IPR005574 GO:0006352|GO:0030880
Lal12g0100 651 SUPERFAMILY Zn-dependent exopeptidases 68 327 - -
Lal12g0100 651 CDD Peptidase_M14NE-CP-C_like 333 408 - -
Lal12g0100 651 Gene3D - 332 411 - -
Lal12g0100 651 Gene3D - 481 604 IPR038324 -
Lal12g0100 651 SUPERFAMILY HRDC-like 492 604 IPR010997 GO:0000166|GO:0044237
Lal12g0100 651 Coils Coil 623 643 - -
Lal12g0100 651 SMART zn_carb 63 310 IPR000834 GO:0004181|GO:0006508|GO:0008270
Lal12g0100 651 SUPERFAMILY Carboxypeptidase regulatory domain-like 333 419 IPR008969 -
Lal12g0100 651 Gene3D Zn peptidases 66 329 - -
Lal12g0100 651 SMART rpol4neu2 488 606 IPR006590 -
Lal12g0100 651 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 1 signature. 110 132 IPR000834 GO:0004181|GO:0006508|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0100 Lal-Chr12 676861 687825 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0100 - K07752 gmx:100775772 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0100 12 676861 687825 Lal12g0100 12 676861 687825 ECH
Lal12g0100 12 676861 687825 Lal13g0083 13 544709 552327 LSH