Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0027 ATGGCAAATATTACCCCCTCAGGTAAATCTGATAATCGCACAAAAGAAGAAAGCAAAGAAACAAGTGCACTGGTTGTTTCCTTTGGTGAATTGTTAATAGACTTTGTGCCAACAGTGAACGGAATATCACTAGTTGAAGCTCCCGCTTTCAAGAAAGCCCCCGGTGGCGCTCCTGCAAATGTGGCTGTTGCCATCTCTAGGCTAGGAGGTTCATCTGCTTTTATAGGGAAGGTTGGAGCAGATGAATTTGGGTATATGTTGGCTGATATTTTGAAGCAGAACAGTGTTGACACAACTGGCATGCGGTTTGACTCTAATGCAAGAACTGCATTAGCTTTTGTTACACTTAGAGCTGATGGCGAGCGCGAGTTCTTGTTTTTTCGAAATCCTAGTGCTGATATGCTTCTTCATGAATCAGAGATTGATAAAAATCTCATAAAGCAGGCTAAAATATTACATTATGGTTCCATCAGCTTGATTGATGAGCCATGCAGATCAGCTCATCTTGCTGCTTTGAGAATTGCTAAAGATTCCGGTTGTATTCTCTCATATGATCCAAATTTGAGATTGGCACTATGGCCATCAGCAGAGTCTGCCCGGGAAGGCATAATGAGTATATGGGATCAAGCTGATGTCATAAAGATAAACGAGGATGAGATTACATTTTTAACCGGTGGTGATGATCCTTATGATGATAATGTAGTACTAGAGAAGCTTTTTCACCCTAATCTCAAGCTTTTAATTGTTACTGAAGGATCGGAGGGTTGTAGATATTACACCAAGGACTTTAGGGGCAGGGTTGCCGGCGTTAAAGTCAAACCTGTTGACACAACCGGTGCTGGTGATGCATTTGTCGGTGGCTTTATTTACAGCATAGCTTCTGACCAAAATATTCTCAAGGAAGAGAAGCGTCTCCGAGAAGCTCTACATTTTGCGAATGTATGTGGTGCCATCACTGTAACAGATAGAGGGGCAATTCCTTCACTACCTACAAAAGAAGCTGTCCTTCAATTCATGTTAGAAGCCACTACAATATAA 1038 0.4181 MANITPSGKSDNRTKEESKETSALVVSFGELLIDFVPTVNGISLVEAPAFKKAPGGAPANVAVAISRLGGSSAFIGKVGADEFGYMLADILKQNSVDTTGMRFDSNARTALAFVTLRADGEREFLFFRNPSADMLLHESEIDKNLIKQAKILHYGSISLIDEPCRSAHLAALRIAKDSGCILSYDPNLRLALWPSAESAREGIMSIWDQADVIKINEDEITFLTGGDDPYDDNVVLEKLFHPNLKLLIVTEGSEGCRYYTKDFRGRVAGVKVKPVDTTGAGDAFVGGFIYSIASDQNILKEEKRLREALHFANVCGAITVTDRGAIPSLPTKEAVLQFMLEATTI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0027 345 Gene3D - 21 344 IPR029056 -
Lal12g0027 345 PRINTS Ribokinase signature 50 69 IPR002139 GO:0016301
Lal12g0027 345 PRINTS Ribokinase signature 205 220 IPR002139 GO:0016301
Lal12g0027 345 PRINTS Ribokinase signature 247 258 IPR002139 GO:0016301
Lal12g0027 345 SUPERFAMILY Ribokinase-like 25 339 IPR029056 -
Lal12g0027 345 CDD bac_FRK 24 326 - -
Lal12g0027 345 Pfam pfkB family carbohydrate kinase 23 331 IPR011611 -
Lal12g0027 345 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 55 79 IPR002173 GO:0016773
Lal12g0027 345 PANTHER FRUCTOKINASE-7-RELATED 16 341 - -
Lal12g0027 345 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 276 289 IPR002173 GO:0016773
Lal12g0027 345 PANTHER HEXOKINASE FAMILY MEMBER 16 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0027 Lal-Chr12 222874 226093 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0027 K00847 - gmx:100818404 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0027 12 222874 226093 Lal12g0027 12 222874 226093 ECH
Lal9g0778 9 5534846 5538328 Lal12g0027 12 222874 226093 PCT
Lal12g0027 12 222874 226093 Lal9g0778 9 5534846 5538328 PCT